View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone |
Immature male cones |
Cambium and expanding xylem |
Cambium |
Expanding xylem |
Expanding and mature xylem |
Maturing xylem |
Wood |
Bark |
Bark, healthy |
S1 xylem tracheids |
S1 whole sections |
S2 ray cells |
S2 xylem tracheids |
S2 whole sections |
Dead late wood |
Phloem and cambium |
Dear early and late wood |
Bark, root and butt rot |
Vegetative shoots - needles |
Vegetative shoots - stem |
Vegetative shoots |
Girdled twig - stem |
Dried twig - needles |
Girdled twig - needles |
Needles |
Needles - dawn |
Needles - later afternoon |
Needles - midday |
Needles - night |
Light, 1 hour |
Light, 3 hours |
Light, 5 hours |
Light, 7 hours |
Light, 9 hours |
Light, 13 hours |
Light, 15 hours |
Darkness, 1 hour |
Darkness, 3 hours |
Darkness, 5 hours |
Darkness, 7 hours |
Darkness, 11 hours |
Vegetative buds |
Female buds |
Male buds |
Buds |
Pineapple galls |
Somatic germinants - abnormal type |
Somatic germinants - normal type |
Cell culture - H20 - 5 days |
Cell culture - KI added - 5 days |
Cell culture - KI added - 20 days |
Cell culture - KI removed - 4 days |
Cell culture - KI removed - 12 days |
Cell culture - solid medium |
Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MA_10435823g0010 (SERK2) |
- | - | - | - | - | - | - | - | - | - | - | - | - | - | -2.18 | - | - | - | - | 3.53 | 1.08 | 0.62 | 1.67 | -1.04 | 1.5 | 0.33 | 3.4 | 1.97 | 2.0 | 3.01 | - | - | - | - | - | - | - | - | - | - | - | - | -0.35 | 0.28 | 0.01 | 0.67 | 0.75 | - | - | - | - | - | - | - | - | - |
MA_10435823g0020 (EFR) |
-3.33 | -1.56 | - | - | - | - | - | -3.62 | -2.2 | -4.69 | - | -6.97 | -5.93 | - | -7.37 | -5.42 | - | - | -5.93 | 2.78 | 0.71 | 1.44 | 1.35 | -0.05 | 1.84 | -0.38 | 2.78 | 2.54 | 1.71 | 2.54 | -1.22 | -1.74 | -1.49 | -1.81 | -1.53 | -2.18 | -2.13 | -1.77 | -1.94 | -2.63 | -1.96 | -2.36 | 0.86 | 0.47 | 0.75 | 0.51 | 2.16 | -6.89 | -8.2 | -7.18 | -4.59 | -4.11 | - | - | -3.9 | -7.59 |
| -2.74 | -1.37 | - | -5.0 | - | - | - | -2.88 | -0.65 | -5.42 | - | -6.63 | -6.6 | - | -4.71 | - | - | -5.99 | -7.04 | 3.05 | 1.1 | 1.4 | 1.92 | -0.61 | 1.18 | -0.34 | 3.29 | 2.21 | 1.27 | 2.46 | -3.54 | -2.87 | -2.13 | -3.86 | -2.64 | -3.83 | - | -3.36 | -3.73 | -4.19 | -2.99 | -4.89 | 0.36 | -0.28 | 1.3 | 0.65 | 2.1 | - | - | - | -5.22 | -4.93 | - | -7.0 | -3.45 | - | |
| - | - | - | - | - | - | 0.37 | - | - | - | - | - | - | - | - | - | - | - | - | 3.26 | - | -2.0 | - | - | - | -0.39 | 3.64 | 2.85 | 0.63 | 3.22 | 0.1 | 0.6 | 0.67 | - | 0.67 | 0.92 | 0.54 | -0.42 | 0.56 | -0.8 | -2.58 | 0.15 | - | - | - | - | -1.86 | -5.5 | -2.88 | - | - | - | - | - | - | - |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.
