View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone |
Immature male cones |
Cambium and expanding xylem |
Cambium |
Expanding xylem |
Expanding and mature xylem |
Maturing xylem |
Wood |
Bark |
Bark, healthy |
S1 xylem tracheids |
S1 whole sections |
S2 ray cells |
S2 xylem tracheids |
S2 whole sections |
Dead late wood |
Phloem and cambium |
Dear early and late wood |
Bark, root and butt rot |
Vegetative shoots - needles |
Vegetative shoots - stem |
Vegetative shoots |
Girdled twig - stem |
Dried twig - needles |
Girdled twig - needles |
Needles |
Needles - dawn |
Needles - later afternoon |
Needles - midday |
Needles - night |
Light, 1 hour |
Light, 3 hours |
Light, 5 hours |
Light, 7 hours |
Light, 9 hours |
Light, 13 hours |
Light, 15 hours |
Darkness, 1 hour |
Darkness, 3 hours |
Darkness, 5 hours |
Darkness, 7 hours |
Darkness, 11 hours |
Vegetative buds |
Female buds |
Male buds |
Buds |
Pineapple galls |
Somatic germinants - abnormal type |
Somatic germinants - normal type |
Cell culture - H20 - 5 days |
Cell culture - KI added - 5 days |
Cell culture - KI added - 20 days |
Cell culture - KI removed - 4 days |
Cell culture - KI removed - 12 days |
Cell culture - solid medium |
Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MA_470478g0010 (CYP82C4) |
- | - | - | - | - | - | - | -3.02 | -3.75 | -0.86 | - | - | - | - | - | - | - | - | 0.1 | - | -0.01 | - | -0.19 | - | - | -1.1 | - | - | - | - | 1.7 | 2.38 | 1.88 | 2.54 | 1.24 | 2.02 | 1.52 | 2.74 | 1.68 | 2.77 | 1.96 | 1.38 | - | - | - | -3.88 | -2.93 | -0.4 | -1.66 | - | - | - | - | - | -4.01 | - |
MA_751160g0010 (PAP18) |
- | 0.88 | - | -2.38 | - | - | - | - | -3.38 | -2.54 | - | - | - | - | - | - | - | - | -0.62 | -0.38 | 0.09 | - | - | - | -1.08 | -4.34 | - | - | -1.16 | - | 1.78 | 2.55 | 1.43 | 2.52 | 1.62 | 2.37 | 0.01 | 3.18 | 1.64 | 2.22 | 0.63 | 1.13 | - | - | - | -1.78 | - | 0.23 | -0.28 | - | - | - | - | -2.11 | - | -2.49 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.
