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View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone |
Immature male cones |
Cambium and expanding xylem |
Cambium |
Expanding xylem |
Expanding and mature xylem |
Maturing xylem |
Wood |
Bark |
Bark, healthy |
S1 xylem tracheids |
S1 whole sections |
S2 ray cells |
S2 xylem tracheids |
S2 whole sections |
Dead late wood |
Phloem and cambium |
Dear early and late wood |
Bark, root and butt rot |
Vegetative shoots - needles |
Vegetative shoots - stem |
Vegetative shoots |
Girdled twig - stem |
Dried twig - needles |
Girdled twig - needles |
Needles |
Needles - dawn |
Needles - later afternoon |
Needles - midday |
Needles - night |
Light, 1 hour |
Light, 3 hours |
Light, 5 hours |
Light, 7 hours |
Light, 9 hours |
Light, 13 hours |
Light, 15 hours |
Darkness, 1 hour |
Darkness, 3 hours |
Darkness, 5 hours |
Darkness, 7 hours |
Darkness, 11 hours |
Vegetative buds |
Female buds |
Male buds |
Buds |
Pineapple galls |
Somatic germinants - abnormal type |
Somatic germinants - normal type |
Cell culture - H20 - 5 days |
Cell culture - KI added - 5 days |
Cell culture - KI added - 20 days |
Cell culture - KI removed - 4 days |
Cell culture - KI removed - 12 days |
Cell culture - solid medium |
Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MA_10425935g0010 (PAP26) |
-1.47 | -0.85 | -1.18 | -2.65 | -0.33 | -0.67 | - | 0.84 | -2.42 | -2.32 | 2.82 | 2.18 | 2.08 | 1.14 | 1.96 | -4.01 | - | -2.0 | -1.68 | -0.17 | -0.82 | 0.11 | -1.38 | 0.33 | 0.5 | 0.5 | -1.29 | -0.54 | -0.89 | -0.92 | 0.04 | 0.24 | 0.03 | -0.34 | -0.37 | -0.04 | -0.18 | -0.29 | -0.25 | -0.03 | 0.51 | -0.17 | -2.19 | -2.36 | -1.74 | -0.3 | 0.19 | -1.28 | -1.05 | -1.19 | -1.43 | -0.98 | -1.17 | -1.3 | -0.27 | 0.0 |
MA_10436555g0010 (SCPL51) |
-0.85 | 1.41 | 0.69 | 0.25 | -0.5 | 0.59 | -3.42 | 1.17 | -1.81 | -0.74 | 2.92 | 2.16 | 2.17 | 1.83 | 1.94 | -2.97 | - | -2.28 | -0.95 | -1.5 | -0.31 | 1.14 | -2.91 | -0.06 | -0.46 | 0.69 | -1.19 | -1.81 | -2.27 | -1.81 | -1.42 | -1.74 | -1.29 | -1.31 | -1.62 | -1.3 | -1.41 | -0.95 | -1.19 | -1.27 | -0.92 | -1.94 | -4.46 | -5.97 | -5.28 | -1.1 | 1.09 | -1.54 | -0.99 | -0.52 | -1.23 | -2.05 | -1.31 | -0.99 | -1.56 | -0.24 |
MA_123444g0010 (TBL7) |
-1.14 | -1.03 | 0.64 | 0.37 | -0.14 | -1.59 | -1.7 | 1.57 | -2.34 | -2.48 | 2.65 | 1.91 | 1.85 | 1.5 | 1.8 | -3.1 | - | -1.54 | -2.17 | -1.53 | 0.32 | -0.13 | -0.76 | -2.88 | -2.01 | 0.57 | -4.32 | -2.62 | -2.58 | -1.79 | -0.13 | -0.42 | -0.42 | -0.31 | -0.01 | 0.14 | 0.01 | 0.12 | -0.09 | -0.28 | -0.19 | -0.09 | -0.59 | -1.32 | -0.52 | 0.51 | 0.46 | -1.02 | -0.77 | -0.81 | -0.35 | -0.47 | -1.22 | -1.17 | 0.22 | -1.84 |
| -3.54 | 2.97 | -4.12 | -5.99 | -0.93 | -2.53 | -3.16 | -0.02 | -8.27 | -9.75 | 3.49 | 2.85 | 3.04 | 2.22 | 2.45 | -3.99 | - | -1.26 | -6.93 | -4.89 | 0.01 | 0.59 | -0.59 | - | - | 0.28 | - | - | - | - | -9.04 | - | -7.13 | -7.83 | - | - | - | -6.05 | - | - | - | - | -6.01 | -8.76 | - | 1.27 | 0.21 | -3.58 | -2.79 | -5.18 | -5.89 | -6.2 | - | -5.53 | -0.85 | - | |
MA_7461249g0010 (LAC11) |
-4.37 | 3.25 | -2.89 | -4.67 | -0.79 | -2.08 | - | 0.18 | - | - | 3.42 | 2.84 | 2.83 | 2.09 | 2.35 | -4.32 | - | -3.78 | -6.8 | -5.33 | 0.6 | 0.85 | -1.17 | - | - | -0.14 | - | - | - | - | - | - | - | -7.48 | - | -6.83 | - | - | - | -7.97 | - | -7.57 | -6.2 | -7.21 | - | 1.69 | 0.37 | -4.9 | -4.06 | -4.29 | -5.67 | -6.63 | - | -6.92 | -1.54 | - |
MA_9373163g0010 (ATSBT5.2) |
-1.27 | 3.03 | -5.29 | -6.98 | -2.0 | 0.39 | - | -1.11 | -4.26 | -7.02 | 3.76 | 2.88 | 2.56 | 1.8 | 1.81 | -8.8 | - | - | -6.72 | -4.8 | -1.17 | 1.67 | -2.11 | -6.64 | -5.42 | 1.14 | -6.4 | -6.9 | -7.34 | -7.02 | -5.92 | -5.61 | -6.03 | -5.75 | -5.89 | -5.78 | -6.47 | -5.83 | -6.26 | -5.29 | -5.86 | -6.2 | -4.19 | -5.0 | -7.23 | -1.02 | 1.95 | -2.59 | -2.03 | -5.23 | -3.94 | -4.84 | -7.45 | -7.43 | -3.51 | -5.0 |
| 0.98 | -0.07 | -2.69 | - | 0.38 | 2.42 | -4.76 | -0.96 | -6.75 | - | 3.76 | 2.91 | 2.51 | 1.6 | 1.73 | - | - | - | - | -8.13 | -1.11 | 1.8 | -3.8 | - | -7.83 | 0.97 | - | -7.19 | - | - | -6.21 | -6.34 | -6.49 | -6.64 | -7.65 | -6.84 | -6.65 | -7.17 | -6.29 | -5.93 | -7.67 | -5.89 | -3.2 | -4.79 | - | -2.6 | 2.24 | -2.33 | -1.33 | -5.74 | -3.36 | -3.18 | -6.99 | -9.85 | -0.59 | - |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.
