View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone |
Immature male cones |
Cambium and expanding xylem |
Cambium |
Expanding xylem |
Expanding and mature xylem |
Maturing xylem |
Wood |
Bark |
Bark, healthy |
S1 xylem tracheids |
S1 whole sections |
S2 ray cells |
S2 xylem tracheids |
S2 whole sections |
Dead late wood |
Phloem and cambium |
Dear early and late wood |
Bark, root and butt rot |
Vegetative shoots - needles |
Vegetative shoots - stem |
Vegetative shoots |
Girdled twig - stem |
Dried twig - needles |
Girdled twig - needles |
Needles |
Needles - dawn |
Needles - later afternoon |
Needles - midday |
Needles - night |
Light, 1 hour |
Light, 3 hours |
Light, 5 hours |
Light, 7 hours |
Light, 9 hours |
Light, 13 hours |
Light, 15 hours |
Darkness, 1 hour |
Darkness, 3 hours |
Darkness, 5 hours |
Darkness, 7 hours |
Darkness, 11 hours |
Vegetative buds |
Female buds |
Male buds |
Buds |
Pineapple galls |
Somatic germinants - abnormal type |
Somatic germinants - normal type |
Cell culture - H20 - 5 days |
Cell culture - KI added - 5 days |
Cell culture - KI added - 20 days |
Cell culture - KI removed - 4 days |
Cell culture - KI removed - 12 days |
Cell culture - solid medium |
Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
MA_10427394g0020 (ICE1) |
-2.19 | -4.76 | -2.22 | -2.34 | -4.37 | - | - | -2.82 | 1.61 | 0.94 | -1.48 | -4.37 | -2.79 | -3.24 | -3.2 | - | 2.94 | - | 1.45 | 0.6 | -0.38 | 1.76 | -2.23 | 0.54 | 0.43 | -0.49 | 0.32 | 0.06 | -0.52 | -0.54 | 0.54 | 0.41 | 0.69 | 0.62 | 0.97 | -0.21 | 0.24 | 0.62 | 0.36 | 1.02 | 1.54 | 1.18 | -5.73 | -3.39 | -6.03 | -3.03 | 1.13 | -2.63 | -3.13 | -1.03 | -0.89 | -1.09 | -1.07 | -1.74 | -0.42 | -2.38 |
| 0.09 | -3.02 | - | - | - | - | - | - | 2.67 | 1.51 | - | - | - | - | - | - | - | - | 1.72 | 1.86 | -0.86 | 2.36 | -1.82 | 1.65 | 1.1 | 0.23 | 0.88 | 1.39 | -0.48 | 1.2 | 0.01 | 0.58 | -0.07 | -0.02 | -0.17 | -0.34 | -0.79 | -0.88 | 0.09 | 0.98 | 1.01 | -0.05 | - | - | - | -2.78 | 2.34 | -2.49 | -3.09 | - | - | - | - | - | - | - | |
| - | - | - | - | - | - | - | - | 3.41 | 1.83 | - | - | - | - | - | - | - | - | 3.24 | 1.91 | 0.35 | -0.61 | - | - | - | -0.03 | 2.92 | - | 0.1 | 1.77 | -0.33 | -0.68 | -0.69 | - | 0.86 | -0.88 | 1.69 | - | - | - | - | -0.36 | - | -1.69 | - | - | 2.02 | -1.7 | -3.42 | -1.07 | - | - | - | - | - | - |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.
