View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone |
Immature male cones |
Cambium and expanding xylem |
Cambium |
Expanding xylem |
Expanding and mature xylem |
Maturing xylem |
Wood |
Bark |
Bark, healthy |
S1 xylem tracheids |
S1 whole sections |
S2 ray cells |
S2 xylem tracheids |
S2 whole sections |
Dead late wood |
Phloem and cambium |
Dear early and late wood |
Bark, root and butt rot |
Vegetative shoots - needles |
Vegetative shoots - stem |
Vegetative shoots |
Girdled twig - stem |
Dried twig - needles |
Girdled twig - needles |
Needles |
Needles - dawn |
Needles - later afternoon |
Needles - midday |
Needles - night |
Light, 1 hour |
Light, 3 hours |
Light, 5 hours |
Light, 7 hours |
Light, 9 hours |
Light, 13 hours |
Light, 15 hours |
Darkness, 1 hour |
Darkness, 3 hours |
Darkness, 5 hours |
Darkness, 7 hours |
Darkness, 11 hours |
Vegetative buds |
Female buds |
Male buds |
Buds |
Pineapple galls |
Somatic germinants - abnormal type |
Somatic germinants - normal type |
Cell culture - H20 - 5 days |
Cell culture - KI added - 5 days |
Cell culture - KI added - 20 days |
Cell culture - KI removed - 4 days |
Cell culture - KI removed - 12 days |
Cell culture - solid medium |
Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| - | -2.35 | - | - | - | - | - | -1.14 | -3.39 | -2.71 | - | - | - | - | - | - | - | - | -1.79 | 1.95 | -0.64 | 0.73 | 0.45 | 1.81 | 1.5 | -1.85 | 0.82 | 1.71 | 2.14 | 2.01 | 1.01 | 0.08 | -0.71 | -0.47 | -0.51 | -0.51 | -0.81 | -2.06 | 0.5 | -1.16 | -1.27 | -1.6 | -4.25 | - | - | -1.58 | -0.58 | -1.73 | -2.17 | 1.0 | 2.11 | 1.48 | 0.89 | 1.04 | 1.68 | -2.99 | |
| -2.0 | -4.11 | -3.89 | -4.48 | -2.46 | - | - | -1.15 | -0.61 | 0.07 | - | -0.94 | -0.19 | -0.48 | -1.44 | - | - | -1.76 | 0.26 | 1.51 | 1.13 | 0.33 | 1.3 | -0.25 | 1.08 | -0.13 | 2.19 | 0.84 | 0.42 | 0.54 | 0.93 | 0.57 | 0.25 | 0.34 | 0.46 | 0.75 | 0.1 | -0.21 | 1.08 | 0.04 | 1.05 | -1.06 | -1.0 | -3.35 | -0.98 | 0.46 | 0.35 | -0.49 | -0.23 | -0.07 | 0.01 | -0.16 | -1.03 | 0.13 | -0.06 | -1.92 | |
| -1.77 | - | - | - | -2.15 | -1.46 | - | -0.68 | -1.16 | -0.66 | - | -0.49 | 0.82 | - | -0.11 | -1.98 | - | - | -0.81 | 2.14 | -0.08 | 1.8 | 1.33 | -0.79 | -0.84 | -0.01 | 2.91 | 2.02 | 1.08 | -1.83 | 1.46 | 0.88 | -1.7 | 0.6 | 0.8 | -1.29 | -0.32 | 0.07 | 1.06 | -0.84 | 0.39 | - | - | - | - | -0.29 | 0.0 | -2.58 | -1.89 | -2.88 | -0.42 | 0.48 | -0.83 | -1.25 | 0.55 | -1.38 | |
| -3.27 | -4.84 | -3.39 | -2.65 | -2.91 | -3.98 | -4.0 | -2.19 | -2.05 | -0.3 | -2.26 | -2.77 | -1.81 | -2.33 | -2.62 | -0.03 | - | -1.84 | -0.88 | 1.18 | -0.6 | -0.14 | -1.04 | 1.78 | 1.17 | -2.09 | 2.21 | 0.6 | 1.55 | 0.43 | 1.33 | 0.8 | 0.07 | 0.51 | 0.68 | 0.4 | 0.3 | -0.95 | 0.72 | 0.4 | 0.43 | -0.52 | -0.78 | -2.21 | -0.93 | -1.56 | 0.14 | 0.07 | 0.28 | 0.77 | 0.55 | 0.81 | 0.47 | 0.47 | 0.56 | -4.28 | |
| - | - | - | -1.73 | -5.75 | -5.99 | - | -2.08 | -1.13 | -0.16 | - | - | -2.52 | -1.22 | - | -2.81 | - | -1.09 | -0.54 | 0.0 | -0.02 | -0.55 | -1.77 | 1.39 | 1.11 | -1.93 | 2.28 | 0.1 | 0.83 | 0.14 | 1.1 | 0.62 | 0.7 | 0.96 | 0.52 | 0.91 | -0.04 | -1.59 | 1.1 | 0.44 | 0.28 | -1.25 | 0.49 | -1.33 | - | -1.04 | -0.77 | 0.01 | -0.11 | 1.31 | 1.22 | 1.34 | 1.03 | 1.16 | 0.94 | -5.66 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.
