View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | Immature female cone |
Immature male cones |
Cambium and expanding xylem |
Cambium |
Expanding xylem |
Expanding and mature xylem |
Maturing xylem |
Wood |
Bark |
Bark, healthy |
S1 xylem tracheids |
S1 whole sections |
S2 ray cells |
S2 xylem tracheids |
S2 whole sections |
Dead late wood |
Phloem and cambium |
Dear early and late wood |
Bark, root and butt rot |
Vegetative shoots - needles |
Vegetative shoots - stem |
Vegetative shoots |
Girdled twig - stem |
Dried twig - needles |
Girdled twig - needles |
Needles |
Needles - dawn |
Needles - later afternoon |
Needles - midday |
Needles - night |
Light, 1 hour |
Light, 3 hours |
Light, 5 hours |
Light, 7 hours |
Light, 9 hours |
Light, 13 hours |
Light, 15 hours |
Darkness, 1 hour |
Darkness, 3 hours |
Darkness, 5 hours |
Darkness, 7 hours |
Darkness, 11 hours |
Vegetative buds |
Female buds |
Male buds |
Buds |
Pineapple galls |
Somatic germinants - abnormal type |
Somatic germinants - normal type |
Cell culture - H20 - 5 days |
Cell culture - KI added - 5 days |
Cell culture - KI added - 20 days |
Cell culture - KI removed - 4 days |
Cell culture - KI removed - 12 days |
Cell culture - solid medium |
Somatic embryogenic cell line |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.16 | - | 1.55 | -0.9 | 1.04 | 3.56 | - | -1.34 | -1.79 | 2.46 | 0.9 | 1.56 | 2.79 | 1.62 | 0.15 | 1.44 | - | - | 1.45 | -2.49 | 0.56 | - | - | - | 0.39 | -0.17 | - | - | - | - | -2.54 | - | - | -0.44 | - | - | - | - | - | - | - | - | -1.86 | -3.48 | 0.61 | - | -1.35 | - | -2.45 | -0.85 | -0.6 | -1.47 | - | -2.76 | -0.04 | -2.91 | |
| - | 0.07 | -0.64 | 1.5 | 2.2 | 2.74 | -0.74 | -1.73 | -1.23 | 2.71 | 0.25 | -1.52 | 1.42 | 2.15 | -0.31 | - | - | 2.1 | 1.81 | -0.38 | -0.72 | -1.74 | - | - | -0.89 | -0.31 | - | - | -0.97 | - | -0.55 | - | -1.76 | -1.42 | -0.63 | -0.95 | -0.69 | -1.99 | -0.04 | - | - | - | -1.15 | -1.34 | -0.3 | - | 1.35 | -1.94 | - | -1.4 | -1.89 | -0.69 | -0.76 | -0.92 | - | -1.61 | |
| - | - | 1.77 | 1.47 | 1.47 | 2.55 | - | -1.14 | -2.61 | 2.0 | 0.63 | 0.54 | 0.5 | - | 0.86 | - | - | 3.17 | 2.0 | - | - | -0.29 | - | - | - | 0.17 | -0.25 | - | -0.49 | -0.39 | -2.34 | - | - | - | -0.09 | - | - | 0.02 | -1.05 | -0.95 | -1.22 | 0.05 | - | - | - | - | 0.85 | -1.39 | -4.01 | 0.45 | 0.27 | -0.31 | 0.6 | -0.43 | -1.2 | -2.82 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.
