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  5. Cba_g55746

Cba_g55746 (Rap2.6L)


Aliases : Rap2.6L

Description : subgroup ERF-X transcription factor & original description: none


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g55746

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00029210 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT1G24590 DRN-LIKE, ESR2,... DORNROSCHEN-like 0.02 OrthoFinder output from all 47 species
AT1G53910 RAP2.12 related to AP2 12 0.02 OrthoFinder output from all 47 species
AT1G64380 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G71450 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G80580 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G50080 ERF110 ethylene response factor 110 0.03 OrthoFinder output from all 47 species
Aspi01Gene03223.t1 DEAR2, Aspi01Gene03223 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene22167.t1 TMO3, CRF2,... subgroup ERF-VI transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene48784.t1 Aspi01Gene48784 cutin and suberin biosynthesis transcription factor... 0.03 OrthoFinder output from all 47 species
Aspi01Gene52705.t1 DREB26, Aspi01Gene52705 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene53896.t1 ORA47, Aspi01Gene53896 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56268.t1 ATERF12, ERF12,... subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene61713.t1 ATERF12, ERF12,... subgroup ERF-VIII transcription factor & original... 0.03 OrthoFinder output from all 47 species
Dac_g38440 RAP2.11 transcription factor *(ERN1) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g40468 No alias subgroup ERF-V transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29251 No alias subgroup ERF-I transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31739 No alias subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01036388001 No alias RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
Gb_08031 tny transcription factor (DREB) 0.08 OrthoFinder output from all 47 species
Gb_08781 ABI4, SAN5,... transcription factor (DREB) 0.02 OrthoFinder output from all 47 species
Gb_09495 RAP2.11 transcription factor (ERF). transcription factor (ERN1) 0.02 OrthoFinder output from all 47 species
Gb_19118 ERF-1, ATERF-1 transcription factor (ERF) 0.07 OrthoFinder output from all 47 species
Gb_25978 ABI4, SAN5,... Ethylene-responsive transcription factor ABI4... 0.02 OrthoFinder output from all 47 species
Gb_41294 No alias transcription factor (DREB) 0.03 OrthoFinder output from all 47 species
Lfl_g16406 TINY2 subgroup ERF-III transcription factor & original... 0.02 OrthoFinder output from all 47 species
Lfl_g30898 RAP2.12 transcription factor component *(HRE/RAP2.12) of... 0.05 OrthoFinder output from all 47 species
Msp_g04571 DEAR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26000 DEAR1, CEJ1, ATERF#011 subgroup ERF-II transcription factor *(ERF19/20) &... 0.03 OrthoFinder output from all 47 species
Ore_g25455 No alias subgroup ERF-I transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28443 RAP2.11 transcription factor *(ERN1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30524 TMO3, CRF2 subgroup ERF-VI transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g32187 No alias subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Smo409196 RAP2.11 External stimuli response.biotic... 0.02 OrthoFinder output from all 47 species
Tin_g14152 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e019566_P001 ATERF12, ERF12,... transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e033352_P001 ERF1, ATERF1,... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e035811_P001 PUCHI, Zm00001e035811 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species
Zm00001e041815_P001 Zm00001e041815 transcription factor (ERF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 309 358
No external refs found!