Lfl_g36451 (AGL6)

Aliases : AGL6

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g36451
Cluster	HCCA: Cluster_135

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00266470	SOC1, AGL20,...	RNA biosynthesis.transcriptional activation.MADS box...	0.05	OrthoFinder output from all 47 species
AMTR_s00047p00190220	AGL4, SEP2,...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT3G30260	AGL79	AGAMOUS-like 79	0.04	OrthoFinder output from all 47 species
AT4G11880	AGL14	AGAMOUS-like 14	0.05	OrthoFinder output from all 47 species
AT4G22950	GL19, AGL19	AGAMOUS-like 19	0.04	OrthoFinder output from all 47 species
AT5G51860	No alias	K-box region and MADS-box transcription factor family protein	0.05	OrthoFinder output from all 47 species
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.03	OrthoFinder output from all 47 species
Als_g17981	FLC, AGL25, FLF	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g04227	AGL18	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene13944.t1	AGL18, Aspi01Gene13944	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene17806.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44619.t1	SOC1, AGL20,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0028.g024032	ANR1, AGL44	MADS/AGL-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Dac_g32355	AGL21	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01008560001	SOC1, AGL20, ATSOC1	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01010221001	AGL62	RNA biosynthesis.transcriptional activation.MADS box...	0.06	OrthoFinder output from all 47 species
GSVIVT01014093001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
Gb_28587	AGL8, FUL	transcription factor (MADS/AGL)	0.06	OrthoFinder output from all 47 species
LOC_Os04g23910.1	AGL16, LOC_Os04g23910	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
LOC_Os06g22760.1	AGL61, DIA,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os10g39130.1	GL19, AGL19,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Len_g22237	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g31282	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g38767	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
MA_412147g0010	SOC1, AGL20, ATSOC1	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_78010g0010	SHP2, AGL5	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Ppi_g18620	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Solyc03g019710.3.1	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Solyc05g012020.4.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc06g059970.4.1	PI, Solyc06g059970	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc06g069430.3.1	AGL8, FUL, Solyc06g069430	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc07g150138.1.1	Solyc07g150138	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Solyc12g038510.2.1	AGL4, SEP2,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Solyc12g056460.3.1	SOC1, AGL20,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Spa_g12045	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g47544	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g49382	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e015447_P001	AGL6, Zm00001e015447	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e027034_P001	PI, Zm00001e027034	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e039774_P001	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004568	chitinase activity	IEP	HCCA
BP	GO:0006022	aminoglycan metabolic process	IEP	HCCA
BP	GO:0006026	aminoglycan catabolic process	IEP	HCCA
BP	GO:0006030	chitin metabolic process	IEP	HCCA
BP	GO:0006032	chitin catabolic process	IEP	HCCA
BP	GO:0006040	amino sugar metabolic process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0046348	amino sugar catabolic process	IEP	HCCA
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	HCCA
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	1	34
IPR002487	TF_Kbox	60	147

External Links

No external refs found!

Lfl_g36451 (AGL6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation