Cba_g62226 (DCL1, CAF, EMB76,...)

Aliases : DCL1, CAF, EMB76, SIN1, ATDCL1, EMB60, SUS1, ASU1

Description : not classified & original description: none

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g62226

Target	Alias	Description	ECC score	Gene Family Method
AT3G20420	ATRTL2, RTL2	RNAse THREE-like protein 2	0.03	OrthoFinder output from all 47 species
AT5G45150	RTL3	RNAse THREE-like protein 3	0.02	OrthoFinder output from all 47 species
Sam_g11612	No alias	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.03	OrthoFinder output from all 47 species
Solyc08g067210.3.1	ATDCL3, DCL3,...	endoribonuclease (DCL3)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003100	PAZ_dom	238	324
IPR000999	RNase_III_dom	576	687
IPR000999	RNase_III_dom	383	495

External Links

No external refs found!

Cba_g62226 (DCL1, CAF, EMB76,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation