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  5. Cba_g62788

Cba_g62788


Description : regulatory protein *(SUO) of miRNA biogenesis pathway & original description: none


Gene families : OG0000514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000514_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g62788
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AT3G48060 No alias BAH domain ;TFIIS helical bundle-like domain 0.03 OrthoFinder output from all 47 species
Aev_g47750 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Ala_g12503 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Als_g18826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02378 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03624 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Aob_g17691 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene40551.t1 Aspi01Gene40551 regulatory protein *(SUO) of miRNA bioGenesis pathway &... 0.03 OrthoFinder output from all 47 species
Cba_g07147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G079200.1 Ceric.11G079200 not classified & original description: pacid=50595155... 0.03 OrthoFinder output from all 47 species
Ceric.16G046100.1 Ceric.16G046100 not classified & original description: pacid=50589203... 0.03 OrthoFinder output from all 47 species
Ceric.23G037400.1 Ceric.23G037400 regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Ehy_g15177 No alias PSY precursor polypeptide & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31579 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os06g42490.1 LOC_Os06g42490 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_33300g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Ore_g15157 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g06454 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005665 No alias not classified & original description: CDS=481-3921 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0078.g017727 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Spa_g25845 No alias regulatory protein *(SUO) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001025 BAH_dom 44 150
IPR017923 TFIIS_N 351 400
No external refs found!