Lfl_g37545

Description : not classified & original description: none

Gene families : OG0004236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004236_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Lfl_g37545
Cluster	HCCA: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00149950	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.06	OrthoFinder output from all 47 species
AT3G06980	No alias	DEA(D/H)-box RNA helicase family protein	0.03	OrthoFinder output from all 47 species
Aev_g11588	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g03135	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.28G050700.1	Ceric.28G050700	not classified & original description: pacid=50570551...	0.03	OrthoFinder output from all 47 species
Cre10.g436650	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dac_g32150	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g07014	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g22864	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g17941	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01017719001	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.1	OrthoFinder output from all 47 species
Gb_19265	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.05	OrthoFinder output from all 47 species
LOC_Os03g01830.1	LOC_Os03g01830	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.07	OrthoFinder output from all 47 species
Mp8g11020.1	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Nbi_g13305	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g36231	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g66303	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005945	No alias	not classified & original description: CDS=228-2279	0.08	OrthoFinder output from all 47 species
Sam_g16562	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Smo142751	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.06	OrthoFinder output from all 47 species
Smo403724	No alias	DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Solyc11g045180.3.1	Solyc11g045180	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Zm00001e039095_P002	Zm00001e039095	DEAD-box ATP-dependent RNA helicase 50 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006721	terpenoid metabolic process	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
BP	GO:0016114	terpenoid biosynthetic process	IEP	HCCA
MF	GO:0016725	oxidoreductase activity, acting on CH or CH2 groups	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034755	iron ion transmembrane transport	IEP	HCCA
MF	GO:0046429	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
MF	GO:0052592	oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	458	574
IPR011545	DEAD/DEAH_box_helicase_dom	237	409

External Links

No external refs found!

Lfl_g37545

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation