Cba_g73866


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g73866

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00098p00167700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g50390,... 0.04 OrthoFinder output from all 47 species
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g07955 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g23916 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g36018 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g16718 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g17503 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g36487 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g06397 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07067 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18804 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g30850 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g55326 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61738 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27297 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g20313 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70336 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene45318.t1 Aspi01Gene45318 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65595.t1 Aspi01Gene65595 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s1396.g102567 No alias not classified & original description: CDS=1-1371 0.07 OrthoFinder output from all 47 species
Cba_g05254 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g06588 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07757 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g19060 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g29529 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34537 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g34770 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g45697 EMB2261 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67745 No alias ssDNA-binding protein *(OSB) & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g71783 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ceric.07G016600.1 Ceric.07G016600 not classified & original description: pacid=50626137... 0.04 OrthoFinder output from all 47 species
Ceric.09G023600.1 Ceric.09G023600 not classified & original description: pacid=50587368... 0.05 OrthoFinder output from all 47 species
Ceric.22G009800.1 Ceric.22G009800 not classified & original description: pacid=50615356... 0.05 OrthoFinder output from all 47 species
Ceric.22G034400.1 Ceric.22G034400 not classified & original description: pacid=50613809... 0.04 OrthoFinder output from all 47 species
Ceric.23G030200.1 Ceric.23G030200 not classified & original description: pacid=50609682... 0.04 OrthoFinder output from all 47 species
Dac_g06637 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g19062 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g23999 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_04079 OTP84 RNA editing factor (MEF19) 0.04 OrthoFinder output from all 47 species
Gb_21824 CRR22 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Gb_28343 OTP84 Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Gb_31111 EMB2758 Pentatricopeptide repeat-containing protein At2g22070... 0.05 OrthoFinder output from all 47 species
Gb_32017 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.05 OrthoFinder output from all 47 species
Gb_39298 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder output from all 47 species
LOC_Os01g15530.1 LOC_Os01g15530 Pentatricopeptide repeat-containing protein At5g56310... 0.03 OrthoFinder output from all 47 species
LOC_Os03g38580.1 EMB2261, LOC_Os03g38580 Pentatricopeptide repeat-containing protein At3g24000,... 0.08 OrthoFinder output from all 47 species
LOC_Os04g14130.1 LOC_Os04g14130 Pentatricopeptide repeat-containing protein At5g16860... 0.04 OrthoFinder output from all 47 species
LOC_Os06g47920.1 LOC_Os06g47920 Pentatricopeptide repeat-containing protein At5g44230... 0.02 OrthoFinder output from all 47 species
MA_136498g0010 CRR22 Pentatricopeptide repeat-containing protein At2g22070... 0.03 OrthoFinder output from all 47 species
MA_27138g0010 No alias RNA editing factor (MEF7) 0.04 OrthoFinder output from all 47 species
MA_82595g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
MA_9360929g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Msp_g23173 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g27428 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g27959 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g01899 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g27419 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g31815 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57069 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g63898 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019261 No alias not classified & original description: CDS=1-3048 0.04 OrthoFinder output from all 47 species
Solyc03g098420.3.1 Solyc03g098420 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Solyc04g016540.2.1 Solyc04g016540 Pentatricopeptide repeat-containing protein At2g39620... 0.07 OrthoFinder output from all 47 species
Solyc04g082870.1.1 Solyc04g082870 Pentatricopeptide repeat-containing protein At1g25360... 0.04 OrthoFinder output from all 47 species
Spa_g00965 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g07522 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g22810 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e008183_P001 Zm00001e008183 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Zm00001e011748_P001 LPA66, Zm00001e011748 Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Zm00001e026664_P002 Zm00001e026664 RNA editing factor (BLX) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 129 155
IPR002885 Pentatricopeptide_repeat 27 51
IPR002885 Pentatricopeptide_repeat 157 181
IPR002885 Pentatricopeptide_repeat 54 99
No external refs found!