Cba_g75248


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g75248

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00075660 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.03 OrthoFinder output from all 47 species
AT1G03540 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G31920 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g46412 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g09043 DOT4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g07474 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g12813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g17427 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g27362 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene64841.t1 Aspi01Gene64841 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65890.t1 Aspi01Gene65890 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0184.g056534 OTP84 not classified & original description: CDS=1-2040 0.03 OrthoFinder output from all 47 species
Cba_g07743 OTP86 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g19787 OTP86 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20164 REME1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g29381 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34546 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g67388 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.06G079700.1 CRR22, Ceric.06G079700 not classified & original description: pacid=50619673... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001657.6 No alias No description available 0.01 OrthoFinder output from all 47 species
Dde_g03462 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06611 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g06719 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g20638 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_24633 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
LOC_Os03g64370.1 LOC_Os03g64370 Pentatricopeptide repeat-containing protein At5g52850,... 0.02 OrthoFinder output from all 47 species
Len_g17565 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_27138g0010 No alias RNA editing factor (MEF7) 0.03 OrthoFinder output from all 47 species
MA_7907g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
Mp8g01790.1 No alias ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Msp_g11341 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28505 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g46446 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g28126 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g22460 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g40890 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g09699 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25244 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51324 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g082870.1.1 Solyc04g082870 Pentatricopeptide repeat-containing protein At1g25360... 0.03 OrthoFinder output from all 47 species
Tin_g16989 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019786 Atg8-specific peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 84 107
IPR002885 Pentatricopeptide_repeat 109 156
IPR002885 Pentatricopeptide_repeat 7 55
No external refs found!