Cba_g77518

Description : platform ATPase CDC48 & original description: none

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g77518
Cluster	HCCA: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00071550	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.03	OrthoFinder output from all 47 species
AMTR_s00154p00076410	CDC48B,...	Cell division control protein 48 homolog B...	0.02	OrthoFinder output from all 47 species
AT3G53230	No alias	ATPase, AAA-type, CDC48 protein	0.02	OrthoFinder output from all 47 species
Adi_g054679	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g14618	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Als_g63726	CIP111	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g05302	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g15787	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07885	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09095	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os06g01980.1	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.02	OrthoFinder output from all 47 species
LOC_Os11g11340.1	CIP111, LOC_Os11g11340	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp3g20500.1	CDC48B	Cell division control protein 48 homolog B...	0.02	OrthoFinder output from all 47 species
Msp_g31553	CDC48B	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g14677	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g52066	CDC48B	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g08291	emb1354, CDC48C	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g53020	emb1354, CDC48C	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g12429	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Solyc05g012190.3.1	CDC48B, Solyc05g012190	Cell division control protein 48 homolog B...	0.02	OrthoFinder output from all 47 species
Zm00001e035514_P002	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003338	CDC4_N-term_subdom	34	115
IPR003959	ATPase_AAA_core	522	655
IPR003959	ATPase_AAA_core	249	378
IPR004201	Cdc48_dom2	135	198
IPR041569	AAA_lid_3	677	718
IPR041569	AAA_lid_3	401	443

External Links

No external refs found!

Cba_g77518

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation