1. Home
  2. Species
  3. Cibotium barometz
  4. Sequence
  5. Cba_g78789

Cba_g78789 (YCF5)


Aliases : YCF5

Description : assembly factor CcsA of CCS cytochrome f/c6 maturation system (system II) & original description: none


Gene families : OG0008998 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008998_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g78789
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
ATCG01040 YCF5 Cytochrome C assembly protein 0.14 OrthoFinder output from all 47 species
Aev_g47212 YCF5 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.28 OrthoFinder output from all 47 species
Ceric.01G044100.1 YCF5, Ceric.01G044100 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.05 OrthoFinder output from all 47 species
Ceric.05G043800.1 YCF5, Ceric.05G043800 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.09 OrthoFinder output from all 47 species
Ceric.05G046400.1 YCF5, Ceric.05G046400 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.03 OrthoFinder output from all 47 species
Ceric.18G053700.1 YCF5, Ceric.18G053700 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.07 OrthoFinder output from all 47 species
Ceric.19G029400.1 YCF5, Ceric.19G029400 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.12 OrthoFinder output from all 47 species
Ceric.35G068700.1 YCF5, Ceric.35G068700 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.12 OrthoFinder output from all 47 species
Ceric.39G055700.1 YCF5, Ceric.39G055700 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.12 OrthoFinder output from all 47 species
GSVIVT01004975001 YCF5 Photosynthesis.photophosphorylation.cytochrome b6/f... 0.06 OrthoFinder output from all 47 species
Gb_33050 YCF5 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.09 OrthoFinder output from all 47 species
LOC_Os06g46434.1 YCF5, LOC_Os06g46434 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.13 OrthoFinder output from all 47 species
Lfl_g37809 YCF5 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.17 OrthoFinder output from all 47 species
Nbi_g17271 YCF5 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.08 OrthoFinder output from all 47 species
Solyc00g500194.1.1 YCF5, Solyc00g500194 Cytochrome c biogenesis protein CcsA OS=Solanum... 0.14 OrthoFinder output from all 47 species
Solyc08g022180.1.1 YCF5, Solyc08g022180 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.13 OrthoFinder output from all 47 species
Solyc11g021210.2.1 YCF5, Solyc11g021210 assembly factor CcsA of CCS cytochrome f/c6 maturation... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0017004 cytochrome complex assembly IEA Interproscan
MF GO:0020037 heme binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002541 Cyt_c_assembly 66 310
No external refs found!