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  5. Lfl_g39067

Lfl_g39067 (SPT)


Aliases : SPT

Description : bHLH-type transcription factor & original description: none


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g39067
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00241810 CIB1,... External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
AMTR_s00039p00032460 PIL5, PIF1,... External stimuli response.light.red/far red light.PIF... 0.02 OrthoFinder output from all 47 species
AT1G02340 HFR1, FBI1, REP1, RSF1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G51140 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G18300 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G43010 SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 0.03 OrthoFinder output from all 47 species
AT3G59060 PIL6, PIF5 phytochrome interacting factor 3-like 6 0.04 OrthoFinder output from all 47 species
AT4G00050 UNE10 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G02590 UNE12 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G09750 HEC3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G67110 ALC basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g021895 CIB1 regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Adi_g103433 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g28088 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g33578 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g49316 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61959 PIL5, PIF1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g21216 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01266.t1 SPT, Aspi01Gene01266 bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene14107.t1 Aspi01Gene14107 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene28459.t1 SPT, Aspi01Gene28459 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene35112.t2 SPT, Aspi01Gene35112 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46202.t2 Aspi01Gene46202 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Cba_g19851 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g24464 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34527 HEC2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g60405 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G021200.1 PIF3, POC1,... bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.13G046500.1 SPT, Ceric.13G046500 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.27G028300.1 SPT, Ceric.27G028300 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.34G041700.1 PIF3, POC1,... bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Cre14.g620850 BIM2 RNA biosynthesis.transcriptional activation.bHLH... 0.01 OrthoFinder output from all 47 species
Dac_g11196 SPT bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g20328 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g01707 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g08111 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12124 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18718 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23473 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09150 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g13825 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g17520 PIL5, PIF1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g18466 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01013553001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
GSVIVT01018164001 UNE10 Transcription factor UNE10 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01018165001 UNE10 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
GSVIVT01020814001 SRL2, PIF4, AtPIF4 External stimuli response.light.red/far red light.PIF... 0.02 OrthoFinder output from all 47 species
GSVIVT01025313001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.04 OrthoFinder output from all 47 species
GSVIVT01026056001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
GSVIVT01028516001 PIL5, PIF1 External stimuli response.light.red/far red light.PIF... 0.02 OrthoFinder output from all 47 species
GSVIVT01032055001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
GSVIVT01033356001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.05 OrthoFinder output from all 47 species
LOC_Os03g58830.1 LOC_Os03g58830 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
LOC_Os04g41229.1 LOC_Os04g41229 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os06g06900.1 SPT, LOC_Os06g06900 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os06g09370.2 LRL3, LOC_Os06g09370 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os07g05010.2 PIL5, PIF1,... transcription factor (bHLH). PIF red/far-red light... 0.02 OrthoFinder output from all 47 species
LOC_Os08g39630.1 LOC_Os08g39630 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os09g29830.1 LOC_Os09g29830 transcription factor (bHLH). transcriptional regulator (CIB) 0.01 OrthoFinder output from all 47 species
Len_g11076 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g19799 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g49441 SPT bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07763 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09086 ATRSL1, RSL1 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g21546 UNE12 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Mp3g17350.1 SPT transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Msp_g42257 CIB1 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Nbi_g15825 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03327 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19414 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19998 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g18900 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13554 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ppi_g32176 RSL2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018719 LRL3 bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Solyc04g007300.4.1 BEE3, Solyc04g007300 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc04g077480.3.1 Solyc04g077480 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc09g097870.4.1 Solyc09g097870 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Spa_g06721 SPT bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g38143 ATRSL1, RSL1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g13248 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g15166 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g27626 SPT bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g38881 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002331_P003 UNE10, Zm00001e002331 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e005046_P003 PIL5, PIF1,... transcription factor (bHLH). PIF red/far-red light... 0.03 OrthoFinder output from all 47 species
Zm00001e009823_P002 LRL1, Zm00001e009823 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e015045_P002 Zm00001e015045 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e016160_P003 SPT, Zm00001e016160 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e017430_P001 PIF3, POC1,... transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e023698_P001 LRL3, Zm00001e023698 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e028489_P003 Zm00001e028489 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e034446_P001 CIB5, Zm00001e034446 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 398 444
No external refs found!