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  5. Lfl_g39791

Lfl_g39791


Description : platform ATPase CDC48 & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g39791

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00117380 evm_27.TU.AmTr_v1... Cell division control protein 48 homolog D... 0.02 OrthoFinder output from all 47 species
AT2G03670 CDC48B cell division cycle 48B 0.03 OrthoFinder output from all 47 species
Ala_g09138 CIP111 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g20264 No alias platform ATPase CDC48 & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g33031 No alias platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g37022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0210.g058064 No alias platform ATPase CDC48 & original description: CDS=1-2484 0.04 OrthoFinder output from all 47 species
Dcu_g10601 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22951 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007689001 No alias Cell division cycle protein 48 homolog OS=Glycine max 0.04 OrthoFinder output from all 47 species
GSVIVT01010343001 emb1354, CDC48C Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species
GSVIVT01025723001 No alias Cell division control protein 48 homolog D... 0.03 OrthoFinder output from all 47 species
GSVIVT01025783001 CIP111 Calmodulin-interacting protein 111 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Mp2g12350.1 emb1354, CDC48C Calmodulin-interacting protein 111 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g03860 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g02118 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g39328 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e004696_P001 Zm00001e004696 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species
Zm00001e012761_P001 Zm00001e012761 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
InterPro domains Description Start Stop
IPR003338 CDC4_N-term_subdom 32 113
IPR004201 Cdc48_dom2 134 197
IPR041569 AAA_lid_3 399 440
IPR041569 AAA_lid_3 675 715
IPR003959 ATPase_AAA_core 247 376
IPR003959 ATPase_AAA_core 520 653
No external refs found!