Description : scaffold nucleoporin of nuclear pore complex *(NUP93) & original description: none
Gene families : OG0006460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006460_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pnu_g00844 | |
| Cluster | HCCA: Cluster_107 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cba_g02704 | No alias | scaffold nucleoporin of nuclear pore complex *(NUP93) &... | 0.03 | OrthoFinder output from all 47 species | |
| Cre17.g717800 | No alias | Protein translocation.nucleus.nucleocytoplasmic... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g22690.1 | LOC_Os03g22690 | NUP93 scaffold nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g15388 | No alias | scaffold nucleoporin of nuclear pore complex *(NUP93) &... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g26058 | No alias | scaffold nucleoporin of nuclear pore complex *(NUP93) &... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e001657_P002 | Zm00001e001657 | NUP93 scaffold nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005643 | nuclear pore | IEA | Interproscan |
| MF | GO:0017056 | structural constituent of nuclear pore | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000774 | adenyl-nucleotide exchange factor activity | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| CC | GO:0005730 | nucleolus | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006457 | protein folding | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| MF | GO:0042802 | identical protein binding | IEP | HCCA |
| MF | GO:0042803 | protein homodimerization activity | IEP | HCCA |
| MF | GO:0044183 | protein folding chaperone | IEP | HCCA |
| MF | GO:0046983 | protein dimerization activity | IEP | HCCA |
| MF | GO:0051087 | chaperone binding | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| MF | GO:0060590 | ATPase regulator activity | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0098772 | molecular function regulator activity | IEP | HCCA |
| MF | GO:0140662 | ATP-dependent protein folding chaperone | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007231 | Nucleoporin_int_Nup93/Nic96 | 248 | 853 |
| No external refs found! |
