1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g06072

Pnu_g06072 (LHCB2.3, LHCB2, LHCB2.4)


Aliases : LHCB2.3, LHCB2, LHCB2.4

Description : component *(LHCb1/2/3) of LHC-II complex & original description: none


Gene families : OG0000137 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000137_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g06072
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00136650 LHCB1.5, LHB1B2,... Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
AT1G29930 LHCB1.3, CAB140,... chlorophyll A/B binding protein 1 0.03 OrthoFinder output from all 47 species
AT2G34420 LHCB1.5, LHB1B2 photosystem II light harvesting complex gene B1B2 0.04 OrthoFinder output from all 47 species
Aev_g18726 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Aop_g14415 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Aop_g18115 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aop_g18116 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Aop_g19772 LHCB1.4, LHB1B1 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aop_g22172 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene23121.t1 LHCB2.3, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene29501.t1 LHCB2.2, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene35945.t1 LHCB5, Aspi01Gene35945 component *(LHCb5) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene53655.t1 LHCB2.3, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene53662.t1 LHCB2.3, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene62512.t1 LHCB2.1, LHCB2,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66566.t1 LHCB2.2, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene71078.t1 LHCB2.3, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene71089.t1 LHCB2.3, LHCB2,... component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Dac_g07197 LHCB1.4, LHB1B1 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Dcu_g31165 LHCB5 component *(LHCb5) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g31946 LHCB3*1, LHCB3 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Dcu_g41148 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ehy_g09693 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01028204001 LHCB1.5, LHB1B2 Chlorophyll a-b binding protein 16, chloroplastic... 0.03 OrthoFinder output from all 47 species
Gb_05837 LHCB2.3, LHCB2, LHCB2.4 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Gb_23732 LHCB1.5, LHB1B2 component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from all 47 species
Len_g20862 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
MA_10431300g0020 LHCB2.2, LHCB2 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
MA_131587g0010 LHCB1.4, LHB1B1 component LHCb1/2/3 of LHC-II complex 0.02 OrthoFinder output from all 47 species
MA_176279g0010 LHCB5 component LHCb5 of LHC-II complex 0.02 OrthoFinder output from all 47 species
MA_267089g0010 LHCB2.1, LHCB2 Chlorophyll a-b binding protein type I, chloroplastic... 0.03 OrthoFinder output from all 47 species
MA_9388552g0010 LHCB2.2, LHCB2 Chlorophyll a-b binding protein type 2 member 2... 0.03 OrthoFinder output from all 47 species
MA_97315g0010 LHCB1.5, LHB1B2 component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Msp_g37073 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Nbi_g10111 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.02 OrthoFinder output from all 47 species
Pir_g04880 LHCB2.3, LHCB2, LHCB2.4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g12813 LHCB1.5, LHB1B2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g32553 CAB3, AB180, LHCB1.2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Ppi_g49652 LHCB1.4, LHB1B1 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Smo75552 LHCB2.3, LHCB2, LHCB2.4 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Spa_g10843 LHCB2.3, LHCB2, LHCB2.4 component *(LHCb1/2/3) of LHC-II complex & original... 0.04 OrthoFinder output from all 47 species
Tin_g06849 LHCB1.5, LHB1B2 component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Zm00001e020624_P001 LHCB1.5, LHB1B2,... component LHCb1/2/3 of LHC-II complex 0.03 OrthoFinder output from all 47 species
Zm00001e020625_P001 LHCB1.5, LHB1B2,... Chlorophyll a-b binding protein 48, chloroplastic OS=Zea... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 69 235
No external refs found!