1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g06087

Pnu_g06087


Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000484 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000484_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g06087
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00139440 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AT5G01070 No alias RING/FYVE/PHD zinc finger superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G60580 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g31446 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13796 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33633 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02973 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g04155 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g15074 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g23757 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene69359.t1 Aspi01Gene69359 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0222.g058783 No alias E3 ubiquitin ligase & original description: CDS=360-1118 0.03 OrthoFinder output from all 47 species
Cba_g68167 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75901 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g14801 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g02898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g04869 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08355 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10273 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016394001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01025179001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_20192 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os04g01490.1 LOC_Os04g01490 RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_9139232g0010 No alias RING-v-class E3 ligase 0.02 OrthoFinder output from all 47 species
Mp7g19060.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Ore_g11364 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14219 No alias E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g25036 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009961 No alias E3 ubiquitin ligase & original description: CDS=391-1818 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023697 No alias not classified & original description: CDS=460-1119 0.02 OrthoFinder output from all 47 species
Solyc11g069350.2.1 Solyc11g069350 RING-v-class E3 ligase 0.04 OrthoFinder output from all 47 species
Spa_g15096 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g02444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g42112 No alias E3 ubiquiTin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e031805_P001 Zm00001e031805 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e040499_P001 Zm00001e040499 RING-v-class E3 ligase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0009916 alternative oxidase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0042325 regulation of phosphorylation IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
MF GO:0043743 LPPG:FO 2-phospho-L-lactate transferase activity IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051338 regulation of transferase activity IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP HCCA
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 269 316
No external refs found!