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  5. Pnu_g07362

Pnu_g07362 (ATO)


Aliases : ATO

Description : component *(SF3A3) of splicing factor 3A complex & original description: none


Gene families : OG0005469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005469_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g07362

Target Alias Description ECC score Gene Family Method Actions
AT5G06160 ATO splicing factor-related 0.02 OrthoFinder output from all 47 species
Als_g01809 ATO component *(SF3A3) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Cre06.g297750 ATO RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
GSVIVT01038711001 ATO RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Sam_g24778 No alias component *(SF3A3) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Tin_g06550 ATO component *(SF3A3) of splicing factor 3A complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e020148_P003 ATO, Zm00001e020148 component SF3A3 of splicing factor 3A complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
CC GO:0005681 spliceosomal complex IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0003352 regulation of cilium movement IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005666 RNA polymerase III complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006383 transcription by RNA polymerase III IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
BP GO:0032886 regulation of microtubule-based process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
BP GO:0060632 regulation of microtubule-based movement IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR021966 SF3a60_bindingd 81 106
IPR031774 SF3A3_dom 128 176
IPR024598 SF3a60/Prp9_C 386 505
No external refs found!