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  5. Pnu_g07479

Pnu_g07479


Description : E3 ubiquitin ligase & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g07479

Target Alias Description ECC score Gene Family Method Actions
AT3G01400 No alias ARM repeat superfamily protein 0.03 OrthoFinder output from all 47 species
Ala_g06711 PUB18, ATPUB18 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g50065 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s2299.g110335 PUB14, ATPUB14 not classified & original description: CDS=293-1597 0.04 OrthoFinder output from all 47 species
Azfi_s2565.g112179 No alias not classified & original description: CDS=1-438 0.03 OrthoFinder output from all 47 species
GSVIVT01007275001 PUB9, ATPUB9 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01009896001 PUB15 U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01036669001 No alias U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os01g60860.1 LOC_Os01g60860 U-box domain-containing protein 16 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os06g01304.1 PUB14, ATPUB14,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os12g38210.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
MA_103976g0010 ATPUB17, PUB17 U-box domain-containing protein 17 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_3998208g0010 PUB13, ATPUB13 U-box domain-containing protein 13 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_468267g0010 PUB9, ATPUB9 U-box domain-containing protein 13 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Pir_g01971 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g14332 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17363 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005097 No alias not classified & original description: CDS=1-2154 0.03 OrthoFinder output from all 47 species
Solyc04g050770.2.1 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004107 chorismate synthase activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 74 113
IPR000225 Armadillo 116 154
IPR000225 Armadillo 35 72
IPR000225 Armadillo 158 195
No external refs found!