Aliases : ATRAB1A, ATRABD2B, RAB1A
Description : D-class RAB GTPase & original description: none
Gene families : OG0001129 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001129_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00111p00145590 | ATRAB1B, RABD2A,... | Vesicle trafficking.regulation of membrane tethering and... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g013330 | ATRAB1B, RABD2A,... | D-class RAB GTPase & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g105164 | RAB1C, ATRAB1C, ATRABD2C | D-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g24852 | ATRAB1B, RABD2A,... | D-class RAB GTPase & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Mp3g00710.1 | ATRAB1A, ATRABD2B, RAB1A | D-class RAB GTPase | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g10383 | ATRAB1A, ATRABD2B, RAB1A | D-class RAB GTPase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g55696 | ATRAB1A, ATRABD2B, RAB1A | D-class RAB GTPase & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ppi_g05020 | RAB1C, ATRAB1C, ATRABD2C | D-class RAB GTPase & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g17450 | RAB1C, ATRAB1C, ATRABD2C | D-class RAB GTPase & original description: none | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003924 | GTPase activity | IEA | Interproscan |
| MF | GO:0005525 | GTP binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005783 | endoplasmic reticulum | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0006457 | protein folding | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016624 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | IEP | HCCA |
| MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | HCCA |
| CC | GO:0030117 | membrane coat | IEP | HCCA |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
| MF | GO:0031072 | heat shock protein binding | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0046540 | U4/U6 x U5 tri-snRNP complex | IEP | HCCA |
| MF | GO:0051082 | unfolded protein binding | IEP | HCCA |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
| CC | GO:0097526 | spliceosomal tri-snRNP complex | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001806 | Small_GTPase | 10 | 170 |
| No external refs found! |
