Description : RING-H2-class BTL-subclass E3 ubiquitin ligase & original description: none
Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Aev_g02428 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g04983 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g10356 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g22830.2 | RHC1A, LOC_Os03g22830 | Probable E3 ubiquitin-protein ligase RHC1A... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os03g59760.1 | ATCRT1, LOC_Os03g59760 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os08g38060.1 | LOC_Os08g38060 | E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| MA_110029g0010 | No alias | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g03871 | No alias | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0101.g019777 | No alias | RING-H2-class BTL-subclass E3 ubiquitin ligase &... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0061630 | ubiquitin protein ligase activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
| MF | GO:0005543 | phospholipid binding | IEP | HCCA |
| BP | GO:0006397 | mRNA processing | IEP | HCCA |
| BP | GO:0007034 | vacuolar transport | IEP | HCCA |
| MF | GO:0008289 | lipid binding | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016624 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | IEP | HCCA |
| MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | HCCA |
| MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | HCCA |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | HCCA |
| MF | GO:0035091 | phosphatidylinositol binding | IEP | HCCA |
| CC | GO:0046540 | U4/U6 x U5 tri-snRNP complex | IEP | HCCA |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | HCCA |
| CC | GO:0097526 | spliceosomal tri-snRNP complex | IEP | HCCA |
| CC | GO:0120114 | Sm-like protein family complex | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR039525 | RNF126-like_zinc-ribbon | 33 | 71 |
| No external refs found! |
