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  5. Pnu_g09551

Pnu_g09551


Description : RNA chaperone *(RZ1) & original description: none


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g09551

Target Alias Description ECC score Gene Family Method Actions
Adi_g003608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g029474 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g12373 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06481 GRP2, ATGRP2, GR-RBP2 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g01618 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10875 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00926 GR-RBP3 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19057.t1 Aspi01Gene19057 RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s1992.g108577 GR-RBP3 not classified & original description: CDS=15-479 0.03 OrthoFinder output from all 47 species
Cba_g06390 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g08805 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g48605 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12830 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g14516 GR-RBP4, GRP4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os04g33810.1 LOC_Os04g33810 Small RNA-binding protein 11, chloroplastic... 0.03 OrthoFinder output from all 47 species
LOC_Os05g13630.1 ATRBP31, CP31,... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g01590 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp2g24130.1 CCR2, ATGRP7,... RNA chaperone (RZ1|GR-RBP) 0.05 OrthoFinder output from all 47 species
Msp_g29443 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02220 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g17696 GR-RBP4, GRP4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g23738 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g05645 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18712 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g09294 GR-RBP5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12344 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10142 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g18834 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17921 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc10g051373.1.1 CCR2, ATGRP7,... RNA chaperone (RZ1|GR-RBP) 0.02 OrthoFinder output from all 47 species
Zm00001e011440_P001 Zm00001e011440 RNA chaperone (RZ1|GR-RBP) 0.03 OrthoFinder output from all 47 species
Zm00001e028502_P003 Zm00001e028502 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 78
IPR001878 Znf_CCHC 119 134
No external refs found!