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  5. Pnu_g10259

Pnu_g10259


Description : not classified & original description: none


Gene families : OG0000359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g10259
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00100040 evm_27.TU.AmTr_v1... 4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
AT5G38120 4CL8 AMP-dependent synthetase and ligase family protein 0.04 OrthoFinder output from all 47 species
Als_g15645 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20640 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17436 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34196.t1 OPCL1, Aspi01Gene34196 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene45695.t2 OPCL1, Aspi01Gene45695 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s1020.g095355 No alias not classified & original description: CDS=69-1760 0.03 OrthoFinder output from all 47 species
Ceric.11G077700.1 Ceric.11G077700 not classified & original description: pacid=50595996... 0.03 OrthoFinder output from all 47 species
Ceric.36G025100.1 OPCL1, Ceric.36G025100 not classified & original description: pacid=50568001... 0.06 OrthoFinder output from all 47 species
Dac_g10656 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g22397 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01001827001 No alias 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01008694001 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_14620 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os01g67540.1 LOC_Os01g67540 4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
MA_10922g0010 OPCL1 OPC-8:CoA synthetase 0.03 OrthoFinder output from all 47 species
Mp1g05060.1 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Msp_g43750 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16903 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g32502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g42148 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g65418 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c3_24370V3.1 Pp3c3_24370 AMP-dependent synthetase and ligase family protein 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025886 OPCL1 not classified & original description: CDS=370-2175 0.03 OrthoFinder output from all 47 species
Smo123905 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc12g094520.2.1 OPCL1, Solyc12g094520 OPC-8:CoA synthetase 0.03 OrthoFinder output from all 47 species
Zm00001e000264_P001 OPCL1, Zm00001e000264 OPC-8:CoA synthetase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig_com 41 442
IPR025110 AMP-bd_C 451 526
No external refs found!