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  5. Als_g01448

Als_g01448


Description : component *(bS21c) of small plastid ribosomal-subunit proteome & original description: none


Gene families : OG0004103 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004103_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g01448
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AT3G27160 GHS1 Ribosomal protein S21 family protein 0.06 OrthoFinder output from all 47 species
Aev_g09196 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ala_g00986 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Aop_g18482 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Azfi_s0003.g007465 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Cba_g02864 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Cba_g08732 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Ceric.13G030700.1 Ceric.13G030700 component *(bS21c) of small plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000863.30 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Cre01.g017300 No alias Protein biosynthesis.organelle translation... 0.1 OrthoFinder output from all 47 species
Dac_g01906 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Dcu_g41032 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
Dde_g05601 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ehy_g00353 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
LOC_Os02g09590.1 GHS1, LOC_Os02g09590 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.11 OrthoFinder output from all 47 species
Len_g15740 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Lfl_g02717 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
MA_249305g0010 No alias component mtRPS21|psRPS21 of mitochondrial ribosome... 0.03 OrthoFinder output from all 47 species
Mp4g21580.1 No alias component mtRPS21|psRPS21 of mitochondrial ribosome... 0.17 OrthoFinder output from all 47 species
Nbi_g05106 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Ore_g01870 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ore_g05303 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ppi_g01614 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007775 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Smo444102 No alias Protein biosynthesis.organelle translation... 0.06 OrthoFinder output from all 47 species
Solyc02g068090.3.1 GHS1, Solyc02g068090 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.06 OrthoFinder output from all 47 species
Spa_g18473 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Tin_g07965 No alias component *(bS21c) of small plastid ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Zm00001e013920_P001 GHS1, Zm00001e013920 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.03 OrthoFinder output from all 47 species
Zm00001e025066_P001 GHS1, Zm00001e025066 component mtRPS21|psRPS21 of mitochondrial ribosome... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001911 Ribosomal_S21 78 131
No external refs found!