Description : component *(SPT20/ADA5) of SAGA transcription co-activator complex & original description: none
Gene families : OG0002206 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002206_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00007p00266960 | evm_27.TU.AmTr_v1... | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G72390 | No alias | CONTAINS InterPro DOMAIN/s: Spt20 family... | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g085780 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g27769 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g34090 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g10954 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0042.g026918 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g38242 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.13G072900.1 | Ceric.13G072900 | component *(SPT20/ADA5) of SAGA transcription... | 0.08 | OrthoFinder output from all 47 species | |
| Dac_g38696 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g06485 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01016716001 | No alias | RNA biosynthesis.RNA polymerase II-dependent... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os01g02860.1 | LOC_Os01g02860 | component SPT20/ADA5 of SAGA transcription co-activator complex | 0.01 | OrthoFinder output from all 47 species | |
| LOC_Os10g25200.1 | LOC_Os10g25200 | component SPT20/ADA5 of SAGA transcription co-activator complex | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g07703 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g13242 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.04 | OrthoFinder output from all 47 species | |
| Mp2g19910.1 | No alias | component SPT20/ADA5 of SAGA transcription co-activator complex | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g32360 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g37205 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.08 | OrthoFinder output from all 47 species | |
| Pir_g15131 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g07983 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.08 | OrthoFinder output from all 47 species | |
| Solyc06g063010.4.1 | Solyc06g063010 | component SPT20/ADA5 of SAGA transcription co-activator complex | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g49888 | No alias | component *(SPT20/ADA5) of SAGA transcription... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e024750_P001 | Zm00001e024750 | component SPT20/ADA5 of SAGA transcription co-activator complex | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003712 | transcription coregulator activity | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| CC | GO:0016592 | mediator complex | IEP | HCCA |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051169 | nuclear transport | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| No external refs found! |
