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  5. Als_g03238

Als_g03238 (APUM12, PUM12)


Aliases : APUM12, PUM12

Description : not classified & original description: none


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g03238

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00167430 PUM7, APUM7,... Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Ala_g02611 APUM12, PUM12 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g20864 PUM7, APUM7 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g18418 PUM7, APUM7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g02347 PUM7, APUM7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01033396001 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01038732001 APUM8, PUM8 Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_41365 APUM12, PUM12 Pumilio homolog 12 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g05711 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17762 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17261 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g028800.3.1 APUM12, PUM12,... Pumilio homolog 12 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 779 796
IPR001313 Pumilio_RNA-bd_rpt 741 774
IPR001313 Pumilio_RNA-bd_rpt 630 661
IPR001313 Pumilio_RNA-bd_rpt 813 847
IPR001313 Pumilio_RNA-bd_rpt 706 736
IPR001313 Pumilio_RNA-bd_rpt 594 628
IPR001313 Pumilio_RNA-bd_rpt 668 696
No external refs found!