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  5. Als_g04491

Als_g04491


Description : not classified & original description: none


Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g04491

Target Alias Description ECC score Gene Family Method Actions
AT3G26560 No alias ATP-dependent RNA helicase, putative 0.03 OrthoFinder output from all 47 species
AT5G13010 EMB3011 RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Adi_g008210 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02597 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g12282 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07221 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Aop_g15706 ESP3, EMB2733 RNA helicase *(Prp2) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g33796 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Ceric.01G059500.1 Ceric.01G059500 not classified & original description: pacid=50591809... 0.06 OrthoFinder output from all 47 species
Dac_g20233 EMB3011 RNA helicase *(Prp16) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g13368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os11g20554.1 LOC_Os11g20554 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Mp2g13680.1 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder output from all 47 species
Mp7g03460.1 EMB3011 RNA helicase (Prp16) 0.02 OrthoFinder output from all 47 species
Msp_g13247 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g07572 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g07808 No alias RNA helicase Prp43 of Intron-Lariat Spliceosome complex... 0.03 OrthoFinder output from all 47 species
Sam_g06275 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g25079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29503 No alias RNA helicase *(Prp22) & original description: none 0.02 OrthoFinder output from all 47 species
Smo233605 No alias Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Smo82212 ESP3, EMB2733 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder output from all 47 species
Solyc07g039550.4.1 Solyc07g039550 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder output from all 47 species
Spa_g12111 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17882 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e014112_P001 Zm00001e014112 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
MF GO:0005254 chloride channel activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
MF GO:0015103 inorganic anion transmembrane transporter activity IEP HCCA
MF GO:0015108 chloride transmembrane transporter activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR011709 DEAD-box_helicase_OB_fold 1100 1175
IPR007502 Helicase-assoc_dom 954 1042
IPR003029 S1_domain 266 333
IPR001650 Helicase_C 762 892
IPR011545 DEAD/DEAH_box_helicase_dom 569 718
No external refs found!