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  5. Als_g06378

Als_g06378


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g06378
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00191560 OTP82,... Pentatricopeptide repeat-containing protein DOT4,... 0.06 OrthoFinder output from all 47 species
Adi_g089158 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g29329 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07176 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g11506 EMB2261 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g17641 CRR22 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g30558 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene48128.t1 Aspi01Gene48128 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0059.g034665 CRR22 not classified & original description: CDS=1-2190 0.04 OrthoFinder output from all 47 species
Azfi_s0063.g035406 CRR22 not classified & original description: CDS=1-1185 0.04 OrthoFinder output from all 47 species
Azfi_s0098.g043939 EMB2758 not classified & original description: CDS=1-1746 0.05 OrthoFinder output from all 47 species
Azfi_s0228.g059086 No alias not classified & original description: CDS=12-1547 0.07 OrthoFinder output from all 47 species
Azfi_s0292.g063413 VAC1, ECB2, ATECB2 not classified & original description: CDS=1-2286 0.07 OrthoFinder output from all 47 species
Cba_g04704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g06369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g67031 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67470 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g74879 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g76834 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g16787 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g03352 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g05950 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12385 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g15564 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16071 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18082 OTP86 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22335 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25985 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46556 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01037377001 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder output from all 47 species
Len_g02887 CRR2 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Len_g04814 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g05469 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g08128 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g12521 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g18949 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g21003 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g23194 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g25352 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g44132 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_597g0020 DOT4 Pentatricopeptide repeat-containing protein At4g02750... 0.06 OrthoFinder output from all 47 species
Msp_g04467 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g14800 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17020 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g17711 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Msp_g31919 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g32206 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g34503 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g45039 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63739 DOT4 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g03741 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g04542 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g15731 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04614 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g13105 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g21500 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g47779 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g53955 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g07204 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g08102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15291 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g16206 OTP84 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g16324 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18026 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g18381 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g23620 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g23705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g32792 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g39088 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g39240 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g43840 OTP84 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g44754 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g44998 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g53139 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g17315 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e041246_P001 Zm00001e041246 Pentatricopeptide repeat-containing protein At3g53360,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 619 666
IPR002885 Pentatricopeptide_repeat 114 161
IPR002885 Pentatricopeptide_repeat 517 564
IPR002885 Pentatricopeptide_repeat 416 463
IPR002885 Pentatricopeptide_repeat 214 262
IPR002885 Pentatricopeptide_repeat 821 869
IPR002885 Pentatricopeptide_repeat 721 768
IPR002885 Pentatricopeptide_repeat 316 362
IPR002885 Pentatricopeptide_repeat 897 919
IPR002885 Pentatricopeptide_repeat 391 413
IPR002885 Pentatricopeptide_repeat 593 616
IPR002885 Pentatricopeptide_repeat 290 310
No external refs found!