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  5. Als_g08530

Als_g08530


Description : not classified & original description: none


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g08530

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00200350 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00065p00083440 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00067p00185510 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G17640 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
AT3G13224 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
AT4G14300 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
Adi_g008733 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g056344 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g059149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g074128 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g085912 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g102181 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g110734 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g111133 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g47700 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g09754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g26133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g12261 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene72146.t1 Aspi01Gene72146 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g09256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g33385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g61818 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76606 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.04G042300.1 Ceric.04G042300 not classified & original description: pacid=50630995... 0.04 OrthoFinder output from all 47 species
Ceric.04G042600.1 Ceric.04G042600 not classified & original description: pacid=50631655... 0.03 OrthoFinder output from all 47 species
Ehy_g07789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01027891001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_33485 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_39961 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os08g23120.1 LOC_Os08g23120 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g02314 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g32654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10917 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g05437 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00898 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g03296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g44409 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g00523 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09717 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g29827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06905 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007884 No alias not classified & original description: CDS=207-1496 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012104 No alias not classified & original description: CDS=283-1629 0.03 OrthoFinder output from all 47 species
Sam_g37554 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g37589 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc03g121710.2.1 Solyc03g121710 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc09g090520.3.1 Solyc09g090520 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g04604 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g07882 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g11266 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g28993 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04592 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07867 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08507 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e030652_P001 Zm00001e030652 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e037155_P004 Zm00001e037155 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 71
IPR000504 RRM_dom 108 175
No external refs found!