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  5. Als_g08686

Als_g08686


Description : CMF transcription factor & original description: none


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g08686

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 CIA2,... RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
AT1G73870 No alias B-box type zinc finger protein with CCT domain 0.03 OrthoFinder output from all 47 species
AT4G25990 CIL CCT motif family protein 0.02 OrthoFinder output from all 47 species
AT5G57180 CIA2 chloroplast import apparatus 2 0.02 OrthoFinder output from all 47 species
Adi_g099497 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g05448 No alias CMF transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g24424 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g30657 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g13442 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20220 No alias BBX class-III transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.16G076600.1 Ceric.16G076600 not classified & original description: pacid=50589566... 0.04 OrthoFinder output from all 47 species
Cre15.g635100 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g09127 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g04980 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08483 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010855001 CIA2 RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
GSVIVT01011897001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
LOC_Os02g49880.1 LOC_Os02g49880 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
Lfl_g06124 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06152 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g17180 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_96860g0010 CIA2 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Pp3c14_8140V3.1 Pp3c14_8140 B-box type zinc finger protein with CCT domain 0.01 OrthoFinder output from all 47 species
Ppi_g17788 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo438000 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
Solyc07g008540.3.1 CIA2, Solyc07g008540 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Tin_g13911 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g20168 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012194_P001 Zm00001e012194 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Zm00001e021820_P001 Zm00001e021820 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Zm00001e030952_P002 Zm00001e030952 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR010402 CCT_domain 477 519
IPR000315 Znf_B-box 23 65
No external refs found!