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  5. Als_g10254

Als_g10254 (ZFN1)


Aliases : ZFN1

Description : regulatory protein of RNA homeostasis & original description: none


Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g10254
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00248880 ZFN1,... RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
AMTR_s00074p00110430 ZFN2,... RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
Adi_g061089 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Cba_g32845 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ceric.34G043900.1 ZFN1, Ceric.34G043900 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Dde_g03936 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ehy_g02478 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ehy_g14501 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Lfl_g16319 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Lfl_g17101 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Nbi_g05812 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Solyc06g054620.4.1 Solyc06g054620 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Solyc11g008900.2.1 ZFN1, Solyc11g008900 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Spa_g31226 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Zm00001e017267_P001 Zm00001e017267 C3H zinc finger transcription factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 303 327
IPR000571 Znf_CCCH 22 45
IPR000571 Znf_CCCH 118 143
IPR000571 Znf_CCCH 72 96
IPR000571 Znf_CCCH 257 282
No external refs found!