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  5. Als_g10935

Als_g10935


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g10935
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.02 OrthoFinder output from all 47 species
AMTR_s00071p00184210 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
AMTR_s00111p00107400 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21065... 0.02 OrthoFinder output from all 47 species
AMTR_s00170p00032020 OTP86,... Pentatricopeptide repeat-containing protein At5g16860... 0.02 OrthoFinder output from all 47 species
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G44785 OSB3 organellar single-stranded DNA binding protein 3 0.02 OrthoFinder output from all 47 species
Adi_g003314 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g003358 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g003786 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g004440 EMB2758 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g011101 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g012547 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g036824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057083 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g060956 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066744 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g069239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075132 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g077235 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g086259 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g17661 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36029 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36200 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g36497 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g37112 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g39842 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g16531 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g22058 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g23486 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28684 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68117 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene04185.t1 Aspi01Gene04185 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24054.t1 OTP82, Aspi01Gene24054 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene56965.t1 Aspi01Gene56965 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026305 EMB2758 not classified & original description: CDS=1-1827 0.03 OrthoFinder output from all 47 species
Azfi_s0190.g056908 No alias not classified & original description: CDS=47-3490 0.03 OrthoFinder output from all 47 species
Azfi_s0221.g058728 OTP86 not classified & original description: CDS=1-2394 0.03 OrthoFinder output from all 47 species
Cba_g04704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05974 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19907 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g29994 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g31382 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G041400.1 Ceric.01G041400 not classified & original description: pacid=50592429... 0.04 OrthoFinder output from all 47 species
Ceric.04G018200.1 OTP84, Ceric.04G018200 not classified & original description: pacid=50630783... 0.03 OrthoFinder output from all 47 species
Ceric.04G036800.1 Ceric.04G036800 not classified & original description: pacid=50632550... 0.03 OrthoFinder output from all 47 species
Ceric.06G009700.1 VAC1, ECB2,... not classified & original description: pacid=50619980... 0.03 OrthoFinder output from all 47 species
Ceric.09G092300.1 Ceric.09G092300 not classified & original description: pacid=50588334... 0.03 OrthoFinder output from all 47 species
Ceric.10G025700.1 VAC1, ECB2,... not classified & original description: pacid=50613326... 0.04 OrthoFinder output from all 47 species
Ceric.19G075900.1 Ceric.19G075900 not classified & original description: pacid=50576584... 0.03 OrthoFinder output from all 47 species
Ceric.1Z079200.1 CRR22, Ceric.1Z079200 not classified & original description: pacid=50582193... 0.04 OrthoFinder output from all 47 species
Ceric.20G040800.1 OTP86, Ceric.20G040800 not classified & original description: pacid=50566943... 0.03 OrthoFinder output from all 47 species
Ceric.23G075300.1 Ceric.23G075300 not classified & original description: pacid=50609898... 0.03 OrthoFinder output from all 47 species
Ceric.31G020200.1 Ceric.31G020200 not classified & original description: pacid=50574865... 0.03 OrthoFinder output from all 47 species
Ceric.33G050800.1 CRR22, Ceric.33G050800 not classified & original description: pacid=50606654... 0.02 OrthoFinder output from all 47 species
Ceric.36G017300.1 Ceric.36G017300 not classified & original description: pacid=50568624... 0.03 OrthoFinder output from all 47 species
Dcu_g04207 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08084 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08279 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08687 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08744 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g16805 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21230 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g21351 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g22763 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g26408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g47718 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02867 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g16409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g18062 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23821 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25009 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g30664 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g42122 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g52150 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_21443 OTP86 Pentatricopeptide repeat-containing protein At3g63370,... 0.03 OrthoFinder output from all 47 species
Gb_33545 CRR22 RNA editing factor (MEF3) 0.03 OrthoFinder output from all 47 species
LOC_Os03g58100.1 OTP85, LOC_Os03g58100 RNA editing factor (OTP85) 0.02 OrthoFinder output from all 47 species
LOC_Os03g59264.1 LOC_Os03g59264 lectin chaperone (CRT) 0.03 OrthoFinder output from all 47 species
Len_g07979 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g17531 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g18996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g19020 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g47144 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05734 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06202 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06746 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07246 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07417 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07761 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07835 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11306 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g12347 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g12501 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g15222 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g16404 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16815 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33282 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g37537 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_381817g0020 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 OrthoFinder output from all 47 species
MA_72886g0010 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.02 OrthoFinder output from all 47 species
Msp_g43591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g06798 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08298 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g28717 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g26690 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g03395 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13334 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g40819 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g43620 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g57549 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63642 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05336 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05859 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05926 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g07430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g17744 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53194 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53684 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g53945 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59322 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g59333 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62885 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g64055 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000724 No alias not classified & original description: CDS=90-728 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0096.g019337 No alias not classified & original description: CDS=1-3108 0.03 OrthoFinder output from all 47 species
Sam_g14044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g28579 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc01g097670.4.1 EMB2261, Solyc01g097670 RNA editing factor (ECD1) 0.03 OrthoFinder output from all 47 species
Solyc03g111210.4.1 Solyc03g111210 RNA editing factor (OTP80) 0.03 OrthoFinder output from all 47 species
Solyc04g076800.3.1 CRR22, Solyc04g076800 Pentatricopeptide repeat-containing protein At4g13650... 0.02 OrthoFinder output from all 47 species
Solyc08g013850.1.1 CRR21, Solyc08g013850 RNA editing factor (CRR21) 0.05 OrthoFinder output from all 47 species
Solyc09g082450.1.1 Solyc09g082450 RNA editing factor (YS1) 0.02 OrthoFinder output from all 47 species
Solyc11g008940.1.1 CRR2, Solyc11g008940 Pentatricopeptide repeat-containing protein At3g46790,... 0.03 OrthoFinder output from all 47 species
Solyc11g017370.3.1 Solyc11g017370 RNA editing factor (AEF1) 0.04 OrthoFinder output from all 47 species
Solyc12g006575.1.1 OTP82, Solyc12g006575 RNA editing factor (OTP82) 0.04 OrthoFinder output from all 47 species
Spa_g30057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54422 No alias ssDNA-binding protein *(OSB) & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g04722 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11871 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14871 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g16670 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g26639 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g41856 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e003605_P001 DOT4, Zm00001e003605 Pentatricopeptide repeat-containing protein DOT4,... 0.03 OrthoFinder output from all 47 species
Zm00001e007042_P001 Zm00001e007042 RNA editing factor (AEF1) 0.03 OrthoFinder output from all 47 species
Zm00001e011467_P004 emb1899, EMB175,... Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species
Zm00001e029186_P001 Zm00001e029186 Pentatricopeptide repeat-containing protein At1g19720... 0.03 OrthoFinder output from all 47 species
Zm00001e034445_P001 LPA66, Zm00001e034445 Pentatricopeptide repeat-containing protein At5g48910... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP HCCA
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046490 isopentenyl diphosphate metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0050992 dimethylallyl diphosphate biosynthetic process IEP HCCA
BP GO:0050993 dimethylallyl diphosphate metabolic process IEP HCCA
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 631 656
IPR002885 Pentatricopeptide_repeat 530 552
IPR002885 Pentatricopeptide_repeat 796 821
IPR002885 Pentatricopeptide_repeat 732 756
IPR002885 Pentatricopeptide_repeat 253 299
IPR002885 Pentatricopeptide_repeat 555 603
IPR002885 Pentatricopeptide_repeat 354 400
IPR002885 Pentatricopeptide_repeat 659 704
IPR002885 Pentatricopeptide_repeat 151 198
IPR002885 Pentatricopeptide_repeat 758 793
IPR002885 Pentatricopeptide_repeat 454 501
IPR046848 E_motif 875 911
IPR002885 Pentatricopeptide_repeat 218 249
No external refs found!