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  5. Als_g12831

Als_g12831 (CIB1)


Aliases : CIB1

Description : regulatory protein (CIB) of blue light perception & original description: none


Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g12831
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00138470 evm_27.TU.AmTr_v1... External stimuli response.light.UV-A/blue... 0.02 OrthoFinder output from all 47 species
AMTR_s00065p00184910 LRL1,... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
AMTR_s00079p00137860 BEE3,... External stimuli response.light.UV-A/blue... 0.02 OrthoFinder output from all 47 species
AT1G26260 CIB5 cryptochrome-interacting basic-helix-loop-helix 5 0.03 OrthoFinder output from all 47 species
AT1G66470 RHD6 ROOT HAIR DEFECTIVE6 0.02 OrthoFinder output from all 47 species
AT2G46970 PIL1 phytochrome interacting factor 3-like 1 0.04 OrthoFinder output from all 47 species
AT3G21330 No alias basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G02590 UNE12 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G33880 RSL2 ROOT HAIR DEFECTIVE 6-LIKE 2 0.04 OrthoFinder output from all 47 species
AT5G09750 HEC3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g048981 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aev_g15255 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ala_g12396 HEC1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14793 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26066 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Ala_g26070 No alias bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g26110 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26152 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Als_g01540 CIB1 regulatory protein (CIB) of blue light perception &... 0.06 OrthoFinder output from all 47 species
Als_g06024 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Als_g09007 CIB1 regulatory protein (CIB) of blue light perception &... 0.06 OrthoFinder output from all 47 species
Als_g30860 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32315 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g50421 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Aob_g10628 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21794 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aop_g39355 RSL2 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01205.t1 CIB1, Aspi01Gene01205 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Aspi01Gene04163.t2 Aspi01Gene04163 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene28550.t1 CIB1, Aspi01Gene28550 regulatory protein (CIB) of blue light perception &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene37755.t1 Aspi01Gene37755 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene56356.t1 LRL1, Aspi01Gene56356 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene59376.t1 HEC3, Aspi01Gene59376 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000030 SPT bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Azfi_s0043.g026959 No alias regulatory protein (CIB) of blue light perception &... 0.05 OrthoFinder output from all 47 species
Azfi_s0054.g033854 No alias bHLH-type transcription factor & original description: CDS=1-1758 0.04 OrthoFinder output from all 47 species
Azfi_s0113.g045847 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Azfi_s0173.g055808 SPT bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Azfi_s2566.g112182 CIB1 regulatory protein (CIB) of blue light perception &... 0.05 OrthoFinder output from all 47 species
Cba_g01170 HEC3 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g05248 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15079 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Cba_g15803 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Ceric.04G045500.1 Ceric.04G045500 bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.11G032200.1 Ceric.11G032200 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ceric.16G026700.1 Ceric.16G026700 regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Ceric.17G001900.1 CIB1, Ceric.17G001900 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ceric.19G069900.1 LRL3, Ceric.19G069900 bHLH-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.21G084700.1 PIF3, POC1,... bHLH-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.22G021400.1 CIB5, Ceric.22G021400 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Dac_g09865 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Dac_g11083 PIF3, POC1, PAP3 bHLH-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Dac_g16940 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Dac_g22699 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03880 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g25890 RHD6 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g51679 HEC2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02214 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29020 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Ehy_g03657 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06624 No alias regulatory protein (CIB) of blue light perception &... 0.06 OrthoFinder output from all 47 species
Ehy_g24826 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g29687 PIL5, PIF1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008093001 No alias External stimuli response.light.UV-A/blue... 0.03 OrthoFinder output from all 47 species
GSVIVT01013553001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
GSVIVT01026516001 HEC3 RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
GSVIVT01031338001 PIF3, POC1, PAP3 External stimuli response.light.red/far red light.PIF... 0.03 OrthoFinder output from all 47 species
GSVIVT01032055001 No alias RNA biosynthesis.transcriptional activation.bHLH... 0.03 OrthoFinder output from all 47 species
Gb_27302 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Gb_33185 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
LOC_Os02g39140.1 LOC_Os02g39140 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os02g47660.1 CIB1, LOC_Os02g47660 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
LOC_Os03g51910.1 LOC_Os03g51910 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
LOC_Os06g06900.1 SPT, LOC_Os06g06900 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
LOC_Os08g39630.1 LOC_Os08g39630 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
LOC_Os09g25040.1 LRL1, LOC_Os09g25040 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Len_g00654 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Len_g10068 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Len_g15871 HEC1 bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g36428 SPT bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g08868 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
MA_10156436g0010 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_10432919g0010 CIB1 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
MA_105921g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
MA_14417g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_26114g0010 SPT transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_306658g0010 No alias transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
MA_42080g0010 CIB1 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
MA_88831g0010 No alias transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
MA_9115341g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
MA_96671g0010 No alias transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Msp_g14891 BPEp, ZCW32, BPE, BPEub regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Msp_g26284 No alias bHLH-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g01184 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g43908 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Ore_g12865 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g34452 RSL2 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44492 No alias regulatory protein (CIB) of blue light perception &... 0.02 OrthoFinder output from all 47 species
Pir_g26288 No alias bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g38111 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Pnu_g13956 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g21397 RSL4 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g27016 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g33726 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c3_8460V3.1 RSL2, Pp3c3_8460 ROOT HAIR DEFECTIVE 6-LIKE 2 0.03 OrthoFinder output from all 47 species
Ppi_g02227 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g28847 No alias regulatory protein (CIB) of blue light perception &... 0.04 OrthoFinder output from all 47 species
Ppi_g33350 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g60624 CIB1 regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g000859 No alias bHLH-type transcription factor & original description: CDS=1-273 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0231.g026442 LRL2 bHLH-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0235.g026543 No alias bHLH-type transcription factor & original description: CDS=1-2082 0.03 OrthoFinder output from all 47 species
Sam_g48191 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc01g107140.3.1 Solyc01g107140 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc01g109700.3.1 CIB1, Solyc01g109700 transcription factor (bHLH). transcriptional regulator (CIB) 0.04 OrthoFinder output from all 47 species
Solyc02g062690.3.1 BEE2, Solyc02g062690 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Solyc02g093280.2.1 SPT, Solyc02g093280 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Solyc03g034000.3.1 BEE2, Solyc03g034000 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc04g007300.4.1 BEE3, Solyc04g007300 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc04g077960.1.1 RSL2, Solyc04g077960 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc04g078790.3.1 HEC2, Solyc04g078790 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc05g006650.3.1 Solyc05g006650 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Solyc06g072520.2.1 Solyc06g072520 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Solyc12g088380.1.1 RSL2, Solyc12g088380 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc12g098620.2.1 Solyc12g098620 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Spa_g10023 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Spa_g11218 No alias bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g13574 HEC1 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g26616 LRL3 bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51777 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Spa_g51778 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Spa_g55981 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g11732 HEC1 bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g31631 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Tin_g32106 No alias regulatory protein (CIB) of blue light perception &... 0.03 OrthoFinder output from all 47 species
Tin_g45190 LRL3 bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000921_P005 Zm00001e000921 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Zm00001e003701_P003 Zm00001e003701 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Zm00001e005554_P001 Zm00001e005554 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Zm00001e006917_P001 PIL5, PIF1,... transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e010138_P002 Zm00001e010138 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e010540_P001 Zm00001e010540 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e011410_P001 Zm00001e011410 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e011866_P002 UNE12, Zm00001e011866 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e012110_P003 Zm00001e012110 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e018857_P002 Zm00001e018857 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Zm00001e018946_P001 Zm00001e018946 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e019392_P001 Zm00001e019392 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e020012_P001 Zm00001e020012 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e027758_P002 Zm00001e027758 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e028489_P003 Zm00001e028489 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species
Zm00001e030725_P001 Zm00001e030725 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e032950_P002 UNE12, Zm00001e032950 transcription factor (bHLH) 0.04 OrthoFinder output from all 47 species
Zm00001e034658_P003 Zm00001e034658 transcription factor (bHLH). transcriptional regulator (CIB) 0.02 OrthoFinder output from all 47 species
Zm00001e035219_P001 Zm00001e035219 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e036318_P001 LRL1, Zm00001e036318 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e036408_P003 SPT, Zm00001e036408 transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Zm00001e037266_P001 Zm00001e037266 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Zm00001e037598_P001 Zm00001e037598 transcription factor (bHLH). transcriptional regulator (CIB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 86 133
No external refs found!