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  5. Als_g19163

Als_g19163


Description : not classified & original description: none


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g19163

Target Alias Description ECC score Gene Family Method Actions
AT3G13224 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from all 47 species
AT4G14300 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
Adi_g013860 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110734 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g05367 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19166 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g50168 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12260 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12261 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g21475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18512.t1 Aspi01Gene18512 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g008091 No alias not classified & original description: CDS=1-1311 0.03 OrthoFinder output from all 47 species
Cba_g33385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g15425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03771 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16933 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01030120001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_33485 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Gb_35079 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Gb_39961 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g03813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g08463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g13554 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17314 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g45356 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Len_g51123 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_68291g0010 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g20052 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g02719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g03296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06905 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc04g077520.3.1 RBP1, ATRBP1,... RNA-binding protein 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc07g045240.3.1 Solyc07g045240 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g04604 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g11285 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g21542 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21639 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 182 250
IPR000504 RRM_dom 92 152
No external refs found!