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  5. Als_g21502

Als_g21502


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g21502

Target Alias Description ECC score Gene Family Method Actions
AT1G05750 PDE247, CLB19 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g111214 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g42381 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g39532 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g05980 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g26551 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g36880 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g09162 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g23401 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Aop_g23786 MEF19 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene49892.t2 Aspi01Gene49892 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001193 No alias not classified & original description: CDS=1-1761 0.04 OrthoFinder output from all 47 species
Azfi_s0083.g038826 No alias not classified & original description: CDS=1-2151 0.03 OrthoFinder output from all 47 species
Cba_g04966 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13662 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g26054 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.06G014300.1 Ceric.06G014300 not classified & original description: pacid=50620883... 0.04 OrthoFinder output from all 47 species
Ceric.06G079700.1 CRR22, Ceric.06G079700 not classified & original description: pacid=50619673... 0.05 OrthoFinder output from all 47 species
Ceric.13G050700.1 Ceric.13G050700 not classified & original description: pacid=50636181... 0.05 OrthoFinder output from all 47 species
Ceric.13G052000.1 Ceric.13G052000 not classified & original description: pacid=50635571... 0.04 OrthoFinder output from all 47 species
Ceric.16G044900.1 Ceric.16G044900 not classified & original description: pacid=50590190... 0.05 OrthoFinder output from all 47 species
Dcu_g06332 CRR2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
LOC_Os01g68490.1 MEF21, LOC_Os01g68490 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os03g13230.1 LOC_Os03g13230 Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
LOC_Os03g52475.1 LOC_Os03g52475 Pentatricopeptide repeat-containing protein At3g28660... 0.03 OrthoFinder output from all 47 species
LOC_Os04g35650.1 LOC_Os04g35650 Pentatricopeptide repeat-containing protein At3g26540... 0.04 OrthoFinder output from all 47 species
LOC_Os04g41120.1 LOC_Os04g41120 Pentatricopeptide repeat-containing protein At4g38010... 0.03 OrthoFinder output from all 47 species
LOC_Os05g50460.1 LOC_Os05g50460 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
LOC_Os07g15570.1 CRR2, LOC_Os07g15570 Pentatricopeptide repeat-containing protein At2g46050,... 0.05 OrthoFinder output from all 47 species
LOC_Os07g46770.1 LOC_Os07g46770 Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
LOC_Os08g25280.1 LOC_Os08g25280 Pentatricopeptide repeat-containing protein At4g39530... 0.03 OrthoFinder output from all 47 species
LOC_Os08g28830.1 LOC_Os08g28830 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os09g15800.1 LOC_Os09g15800 Pentatricopeptide repeat-containing protein At4g02750... 0.03 OrthoFinder output from all 47 species
LOC_Os10g40920.1 LOC_Os10g40920 RNA editing factor (MEF13) 0.02 OrthoFinder output from all 47 species
LOC_Os11g01836.1 LOC_Os11g01836 Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
LOC_Os11g45410.1 LOC_Os11g45410 Pentatricopeptide repeat-containing protein At4g13650... 0.04 OrthoFinder output from all 47 species
Len_g19878 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07823 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Mp8g01790.1 No alias ssDNA-binding protein (OSB) 0.02 OrthoFinder output from all 47 species
Nbi_g06660 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g11833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g15801 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g20613 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g22679 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g37474 LOI1, MEF11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g41047 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g32582 EMB2261 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g57545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63739 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g06094 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pp3c17_4940V3.1 Pp3c17_4940 organellar single-stranded DNA binding protein 3 0.01 OrthoFinder output from all 47 species
Ppi_g49408 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53286 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005702 No alias not classified & original description: CDS=46-1077 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0092.g018986 No alias not classified & original description: CDS=1-1941 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0139.g022629 No alias not classified & original description: CDS=614-2965 0.02 OrthoFinder output from all 47 species
Sam_g02656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g20467 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g21545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g45659 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g08654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016281_P001 LPA66, Zm00001e016281 Pentatricopeptide repeat-containing protein At3g62890... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 230 277
IPR002885 Pentatricopeptide_repeat 128 174
IPR002885 Pentatricopeptide_repeat 332 379
IPR002885 Pentatricopeptide_repeat 407 430
IPR002885 Pentatricopeptide_repeat 306 328
IPR032867 DYW_dom 547 639
IPR046848 E_motif 449 511
No external refs found!