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  5. Pnu_g12637

Pnu_g12637


Description : non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex & original description: none


Gene families : OG0000988 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000988_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g12637

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00194810 CLPR4,... Protein degradation.peptidase families.serine-type... 0.04 OrthoFinder output from all 47 species
AMTR_s00164p00068000 CLPR1, SVR2,... Protein degradation.peptidase families.serine-type... 0.05 OrthoFinder output from all 47 species
AT1G09130 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.02 OrthoFinder output from all 47 species
AT1G49970 CLPR1, SVR2, NCLPP5 CLP protease proteolytic subunit 1 0.04 OrthoFinder output from all 47 species
Adi_g019566 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Adi_g074670 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Adi_g087162 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Aev_g07767 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.06 OrthoFinder output from all 47 species
Ala_g09550 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Als_g00665 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Als_g01710 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Aob_g02995 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Aob_g22566 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Aop_g23397 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Aspi01Gene40533.t1 CLPR4, Aspi01Gene40533 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g08836 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Cba_g15422 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.06 OrthoFinder output from all 47 species
Ceric.03G040500.1 CLPR1, SVR2,... non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001420.2 No alias Protein degradation.peptidase families.serine-type... 0.01 OrthoFinder output from all 47 species
Dac_g06754 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Dac_g10911 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Dcu_g02591 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Dcu_g11508 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Dde_g02711 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Dde_g21817 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.06 OrthoFinder output from all 47 species
Ehy_g01031 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Ehy_g02196 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Ehy_g18668 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
GSVIVT01003696001 CLPR4 Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder output from all 47 species
GSVIVT01031146001 No alias Protein degradation.peptidase families.serine-type... 0.04 OrthoFinder output from all 47 species
Gb_12676 No alias non-proteolytic core component ClpR of chloroplast... 0.06 OrthoFinder output from all 47 species
Gb_40312 CLPR4 non-proteolytic core component ClpR of chloroplast... 0.03 OrthoFinder output from all 47 species
LOC_Os03g22430.1 LOC_Os03g22430 non-proteolytic core component ClpR of chloroplast... 0.02 OrthoFinder output from all 47 species
LOC_Os05g51450.1 CLPR1, SVR2,... non-proteolytic core component ClpR of chloroplast... 0.06 OrthoFinder output from all 47 species
Len_g10203 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
MA_10429819g0020 CLPR1, SVR2, NCLPP5 non-proteolytic core component ClpR of chloroplast... 0.02 OrthoFinder output from all 47 species
Mp6g21300.1 No alias non-proteolytic core component ClpR of chloroplast... 0.02 OrthoFinder output from all 47 species
Mp7g18600.1 CLPR1, SVR2, NCLPP5 non-proteolytic core component ClpR of chloroplast... 0.02 OrthoFinder output from all 47 species
Msp_g05047 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Msp_g06430 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.04 OrthoFinder output from all 47 species
Nbi_g05257 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Pir_g12837 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003581 CLPR4 non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004018 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Sam_g11367 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.02 OrthoFinder output from all 47 species
Sam_g52083 No alias non-proteolytic core component *(ClpR) of chloroplast... 0.03 OrthoFinder output from all 47 species
Smo153292 No alias Protein degradation.peptidase families.serine-type... 0.03 OrthoFinder output from all 47 species
Solyc01g099690.3.1 Solyc01g099690 non-proteolytic core component ClpR of chloroplast... 0.04 OrthoFinder output from all 47 species
Spa_g11689 CLPR1, SVR2, NCLPP5 non-proteolytic core component *(ClpR) of chloroplast... 0.05 OrthoFinder output from all 47 species
Zm00001e017288_P001 CLPR4, Zm00001e017288 non-proteolytic core component ClpR of chloroplast... 0.02 OrthoFinder output from all 47 species
Zm00001e032571_P001 CLPR1, SVR2,... non-proteolytic core component ClpR of chloroplast... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 121 300
No external refs found!