Als_g23321 (DRD3, ATNRPD1B,...)

Aliases : DRD3, ATNRPD1B, NRPD1B, NRPE1, DMS5

Description : not classified & original description: none

Gene families : OG0002547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002547_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g23321

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00153410	NRPD1A, POL IVA,...	DNA-directed RNA polymerase IV subunit 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Adi_g023510	DRD3, ATNRPD1B,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0024.g020355	DRD3, ATNRPD1B,...	component *(NRPE1) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Gb_21425	DRD3, ATNRPD1B,...	subunit 1 of Pol V RNA polymerase	0.03	OrthoFinder output from all 47 species
LOC_Os02g05880.1	DRD3, ATNRPD1B,...	subunit 1 of Pol V RNA polymerase	0.02	OrthoFinder output from all 47 species
Lfl_g19571	DRD3, ATNRPD1B,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g38982	DRD3, ATNRPD1B,...	component *(NRPE1) of RNA polymerase V complex &...	0.04	OrthoFinder output from all 47 species
Ppi_g46354	NRPD1A, POL IVA,...	component *(NRPE1) of RNA polymerase V complex &...	0.03	OrthoFinder output from all 47 species
Solyc01g096390.4.1	DRD3, ATNRPD1B,...	subunit 1 of Pol V RNA polymerase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005672	transcription factor TFIIA complex	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140612	DNA damage sensor activity	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140664	ATP-dependent DNA damage sensor activity	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007080	RNA_pol_Rpb1_1	17	459
IPR000722	RNA_pol_asu	508	667
IPR007083	RNA_pol_Rpb1_4	883	950
IPR007081	RNA_pol_Rpb1_5	989	1438
IPR007066	RNA_pol_Rpb1_3	671	815

External Links

No external refs found!

Als_g23321 (DRD3, ATNRPD1B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation