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  5. Als_g26320

Als_g26320


Description : not classified & original description: none


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g26320

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G60190 No alias ARM repeat superfamily protein 0.02 OrthoFinder output from all 47 species
Als_g16594 PUB14, ATPUB14 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g31832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g17483 PUB15 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32107 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene33577.t1 PUB14, ATPUB14,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene43158.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44183.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44184.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene44185.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.26G012900.1 Ceric.26G012900 not classified & original description: pacid=50598948... 0.03 OrthoFinder output from all 47 species
Ehy_g02654 No alias E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11164 PUB12, AtPUB12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021265001 ATPUB17, PUB17 U-box domain-containing protein 17 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_08792 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.04 OrthoFinder output from all 47 species
Gb_20805 ATPUB17, PUB17 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Gb_24091 PUB9, ATPUB9 U-box domain-containing protein 14 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10431607g0010 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.02 OrthoFinder output from all 47 species
MA_69133g0010 PUB14, ATPUB14 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Ore_g05165 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20708 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g02760 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g17953 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003607 ATPUB17, PUB17 not classified & original description: CDS=1-2595 0.03 OrthoFinder output from all 47 species
Smo75609 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula 0.02 OrthoFinder output from all 47 species
Solyc03g114160.1.1 Solyc03g114160 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Solyc04g082440.4.1 PUB15, Solyc04g082440 U-box domain-containing protein 15 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc06g076040.3.1 PUB13, ATPUB13,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Zm00001e014566_P002 PUB9, ATPUB9,... E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Zm00001e019429_P001 Zm00001e019429 U-box domain-containing protein 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e028839_P001 Zm00001e028839 U-box domain-containing protein 16 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e034012_P001 Zm00001e034012 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006308 DNA catabolic process IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000225 Armadillo 436 471
IPR003613 Ubox_domain 297 367
No external refs found!