Als_g28879 (PUB26)

Aliases : PUB26

Description : not classified & original description: none

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g28879

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00030p00161650	PUB23,...	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
AT5G09800	No alias	ARM repeat superfamily protein	0.01	OrthoFinder output from all 47 species
Aop_g07152	PUB25	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g20934	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene15674.t1	PUB26, Aspi01Gene15674	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene17992.t1	PUB25, Aspi01Gene17992	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene18452.t1	PUB25, Aspi01Gene18452	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene18453.t1	PUB25, Aspi01Gene18453	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene43215.t1	PUB24, Aspi01Gene43215	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44325.t1	PUB23, Aspi01Gene44325	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene44326.t1	PUB23, Aspi01Gene44326	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aspi01Gene56365.t1	PUB25, Aspi01Gene56365	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s2565.g112180	PUB8, B80	not classified & original description: CDS=1-453	0.08	OrthoFinder output from all 47 species
Cba_g16814	PUB26	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g78214	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os03g13740.1	LOC_Os03g13740	U-box domain-containing protein 20 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
LOC_Os04g34030.1	PUB23, LOC_Os04g34030	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
LOC_Os04g58920.1	PUB23, LOC_Os04g58920	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
MA_5536318g0010	No alias	no hits & (original description: none)	0.01	OrthoFinder output from all 47 species
Mp3g22750.1	PUB26	U-box domain-containing protein 26 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
Pnu_g27483	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c4_20710V3.1	PUB26, Pp3c4_20710	plant U-box 25	0.01	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002717	PUB26	not classified & original description: CDS=1-1404	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011093	PUB23	not classified & original description: CDS=1-1278	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015794	PUB26	U-Box-group-III E3 ubiquitin ligase & original...	0.02	OrthoFinder output from all 47 species
Sam_g15131	No alias	E3 ubiquitin ligase *(PUB8) & original description: none	0.01	OrthoFinder output from all 47 species
Zm00001e015763_P001	Zm00001e015763	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e022698_P001	PUB26, Zm00001e022698	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	5	76

External Links

No external refs found!

Als_g28879 (PUB26)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation