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  5. Als_g29896

Als_g29896 (SOC1, AGL20, ATSOC1)


Aliases : SOC1, AGL20, ATSOC1

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g29896
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT4G24540 AGL24 AGAMOUS-like 24 0.02 OrthoFinder output from all 47 species
AT5G51870 AGL71 AGAMOUS-like 71 0.03 OrthoFinder output from all 47 species
Adi_g060361 AGL18 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g38630 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G037700.1 AGL65, Ceric.06G037700 MADS/AGL-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
LOC_Os01g66290.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g45770.1 AGL6, LOC_Os02g45770 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_333471g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_6042439g0010 AGL9, SEP3 transcription factor (MADS/AGL) 0.01 OrthoFinder output from all 47 species
Msp_g42364 STK, AGL11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07685 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g49562 SHP2, AGL5 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04968 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g019710.3.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 206 286
IPR002100 TF_MADSbox 123 170
No external refs found!