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  5. Als_g30416

Als_g30416 (HAF01, HAC13, TAF1, HAF1, GTD1)


Aliases : HAF01, HAC13, TAF1, HAF1, GTD1

Description : component *(HAF/TAF1) of SAGA transcription co-activator complex & original description: none


Gene families : OG0003088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g30416

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00132750 HAF01, HAC13,... Protein modification.phosphorylation.atypical kinase... 0.04 OrthoFinder output from all 47 species
AT1G32750 HAF01, HAC13,... HAC13 protein (HAC13) 0.05 OrthoFinder output from all 47 species
Adi_g086241 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Ala_g25268 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Aop_g13570 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Aspi01Gene49967.t1 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Azfi_s0007.g011150 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ceric.20G008000.1 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020903.20 HAF01, HAC13,... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Cre10.g425501 HAF01, HAC13,... Transcription initiation factor TFIID subunit 1 OS=Oryza... 0.04 OrthoFinder output from all 47 species
Dcu_g03217 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ehy_g23638 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
GSVIVT01020528001 HAF01, HAC13,... Protein modification.phosphorylation.atypical kinase... 0.03 OrthoFinder output from all 47 species
LOC_Os06g43790.1 HAF01, HAC13,... component HAF/TAF1 of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Lfl_g06767 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ore_g04821 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Pir_g10966 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ppi_g32049 HAF01, HAC13,... component *(HAF/TAF1) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Sam_g37859 No alias component *(HAF/TAF1) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Smo409957 HAF01, HAC13,... Protein modification.phosphorylation.atypical kinase... 0.03 OrthoFinder output from all 47 species
Solyc07g006820.4.1 HAF01, HAC13,... component HAF/TAF1 of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Zm00001e037464_P001 HAF01, HAC13,... component HAF/TAF1 of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001487 Bromodomain 500 574
No external refs found!