1. Home
  2. Species
  3. Alsophila latebrosa
  4. Sequence
  5. Als_g30777

Als_g30777


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g30777
Cluster HCCA: Cluster_210

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00130050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Adi_g003790 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g022660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g034179 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g078542 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g095461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g097993 DOT4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07420 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10279 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g21265 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g31168 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g04184 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g08304 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g08457 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g10916 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27809 MEF21 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04156 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g17248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g18332 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20429 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene06826.t1 CRR2, Aspi01Gene06826 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26858.t1 Aspi01Gene26858 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0001.g000396 No alias not classified & original description: CDS=1-2745 0.03 OrthoFinder output from all 47 species
Azfi_s0005.g008963 No alias not classified & original description: CDS=1-2157 0.04 OrthoFinder output from all 47 species
Azfi_s0099.g044007 REME1 not classified & original description: CDS=1-1401 0.04 OrthoFinder output from all 47 species
Azfi_s0242.g059832 No alias not classified & original description: CDS=1-2646 0.03 OrthoFinder output from all 47 species
Azfi_s0503.g073910 No alias not classified & original description: CDS=59-2179 0.03 OrthoFinder output from all 47 species
Cba_g34541 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g60651 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g67913 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.28G055900.1 Ceric.28G055900 not classified & original description: pacid=50569676... 0.05 OrthoFinder output from all 47 species
Ceric.39G043600.1 Ceric.39G043600 not classified & original description: pacid=50582616... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.24 No alias Pentatricopeptide repeat-containing protein At1g63080,... 0.01 OrthoFinder output from all 47 species
Dac_g30466 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g30474 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g36384 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g43213 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g23599 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23605 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28705 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36299 REME1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g41263 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47962 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g49721 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01000244001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 OrthoFinder output from all 47 species
GSVIVT01008173001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.04 OrthoFinder output from all 47 species
GSVIVT01017209001 VAC1, ECB2, ATECB2 RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
GSVIVT01021246001 DOT4 Pentatricopeptide repeat-containing protein DOT4,... 0.06 OrthoFinder output from all 47 species
GSVIVT01023644001 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.05 OrthoFinder output from all 47 species
GSVIVT01028154001 No alias Pentatricopeptide repeat-containing protein At2g35030,... 0.04 OrthoFinder output from all 47 species
GSVIVT01036943001 LPA66 Pentatricopeptide repeat-containing protein At5g48910... 0.04 OrthoFinder output from all 47 species
Gb_27891 OTP86 RNA editing factor (OTP86) 0.02 OrthoFinder output from all 47 species
Lfl_g02262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g04959 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05719 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g07771 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07805 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g22099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g32453 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10436932g0010 No alias ssDNA-binding protein (OSB). TAC9 cofactor of... 0.04 OrthoFinder output from all 47 species
MA_187514g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.04 OrthoFinder output from all 47 species
MA_72886g0010 No alias Pentatricopeptide repeat-containing protein At5g50390,... 0.02 OrthoFinder output from all 47 species
MA_794605g0010 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Mp5g04990.1 PTAC9, OSB2 ssDNA-binding protein (OSB). TAC9 cofactor of... 0.03 OrthoFinder output from all 47 species
Msp_g17454 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g25096 OTP84 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27843 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g27954 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g43377 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g44509 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30445 REME1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44735 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12416 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13627 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g57196 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g63613 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g22838 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25064 CRR22 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18475 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g22234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g31299 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g55608 LPA66 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003208 No alias monogalactosyldiacylglycerol lipase *(HIL1) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012385 No alias not classified & original description: CDS=1-1908 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0079.g017838 No alias component *(CAL) of NADH dehydrogenase carbonic... 0.02 OrthoFinder output from all 47 species
Sam_g08403 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g16013 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29223 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc03g025700.2.1 Solyc03g025700 OTP70 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Solyc07g062820.1.1 Solyc07g062820 RNA editing factor (SEL1/PDM1) 0.03 OrthoFinder output from all 47 species
Spa_g14016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g14610 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16937 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g17850 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g06389 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g21292 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g35061 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e015440_P001 CRR22, Zm00001e015440 Pentatricopeptide repeat-containing protein At3g57430,... 0.05 OrthoFinder output from all 47 species
Zm00001e020442_P001 Zm00001e020442 Pentatricopeptide repeat-containing protein At4g21300... 0.04 OrthoFinder output from all 47 species
Zm00001e021453_P001 CRR28, Zm00001e021453 Pentatricopeptide repeat-containing protein At5g06540... 0.04 OrthoFinder output from all 47 species
Zm00001e041048_P001 OTP86, Zm00001e041048 RNA editing factor (OTP86) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 60 107
IPR002885 Pentatricopeptide_repeat 162 209
IPR002885 Pentatricopeptide_repeat 36 57
No external refs found!