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  5. Als_g30812

Als_g30812


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g30812
Cluster HCCA: Cluster_272

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00232800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g32430,... 0.04 OrthoFinder output from all 47 species
AMTR_s00010p00259620 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g35030,... 0.04 OrthoFinder output from all 47 species
Adi_g036750 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g09082 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g37463 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g10709 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g27592 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g03329 MEF22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04129 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g05733 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13659 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g20191 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g21140 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g25531 No alias ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28719 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g31401 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g31824 VAC1, ECB2, ATECB2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g37609 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g67754 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g67864 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g69416 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene14400.t1 CRR2, Aspi01Gene14400 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene36977.t1 Aspi01Gene36977 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39512 CRR22 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g42364 REME1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g03284 DOT4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g04371 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g09099 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g12647 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g17539 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17670 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g22610 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g22999 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28521 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g29466 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g50097 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10023 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15996 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g26389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01025574001 No alias Pentatricopeptide repeat-containing protein At2g37320... 0.02 OrthoFinder output from all 47 species
LOC_Os01g27650.1 LOC_Os01g27650 Pentatricopeptide repeat-containing protein At2g33680... 0.02 OrthoFinder output from all 47 species
MA_184088g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.09 OrthoFinder output from all 47 species
MA_7907g0020 OTP84 Pentatricopeptide repeat-containing protein At3g57430,... 0.1 OrthoFinder output from all 47 species
Msp_g25414 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g06586 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g19959 CRR22 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g22808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g35307 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pnu_g04466 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g22129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g21461 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo123298 OTP84 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species
Solyc01g081560.2.1 Solyc01g081560 Pentatricopeptide repeat-containing protein At4g13650... 0.03 OrthoFinder output from all 47 species
Solyc06g062610.2.1 Solyc06g062610 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
Tin_g05998 REME1 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g06583 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g17143 VAC1, ECB2, ATECB2 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g26898 EMB2758 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g44240 EMB2758 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g45291 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 98 120
IPR002885 Pentatricopeptide_repeat 21 69
No external refs found!