Als_g32429

Description : helicase UAP56 & original description: none

Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g32429

Target	Alias	Description	ECC score	Gene Family Method
Aob_g12468	No alias	helicase UAP56 & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g30475	No alias	helicase UAP56 & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g07010	No alias	helicase UAP56 & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g12256	No alias	helicase UAP56 & original description: none	0.05	OrthoFinder output from all 47 species
Cba_g75000	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g19847	No alias	helicase UAP56 & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g11077	No alias	helicase UAP56 & original description: none	0.04	OrthoFinder output from all 47 species
Gb_04230	No alias	RNA helicase (Sub2). helicase component UAP56 of...	0.02	OrthoFinder output from all 47 species
LOC_Os01g36890.2	LOC_Os01g36890	RNA helicase (Sub2). helicase component UAP56 of...	0.03	OrthoFinder output from all 47 species
Lfl_g13215	No alias	helicase UAP56 & original description: none	0.04	OrthoFinder output from all 47 species
MA_99733g0010	No alias	RNA helicase (Sub2). helicase component UAP56 of...	0.02	OrthoFinder output from all 47 species
Mp1g02350.1	No alias	RNA helicase (Sub2). helicase component UAP56 of...	0.02	OrthoFinder output from all 47 species
Msp_g43528	No alias	helicase UAP56 & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g07150	No alias	helicase UAP56 & original description: none	0.06	OrthoFinder output from all 47 species
Solyc08g061000.4.1	Solyc08g061000	RNA helicase (Sub2). helicase component UAP56 of...	0.02	OrthoFinder output from all 47 species
Spa_g50791	No alias	helicase UAP56 & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g14284	No alias	helicase UAP56 & original description: none	0.07	OrthoFinder output from all 47 species
Tin_g31414	No alias	helicase UAP56 & original description: none	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005680	anaphase-promoting complex	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006813	potassium ion transport	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
BP	GO:0034220	monoatomic ion transmembrane transport	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0071805	potassium ion transmembrane transport	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0098655	monoatomic cation transmembrane transport	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098662	inorganic cation transmembrane transport	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	277	384
IPR011545	DEAD/DEAH_box_helicase_dom	72	237

External Links

No external refs found!

Als_g32429

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation