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  5. Als_g33091

Als_g33091 (HSS, ARF1-BP, ARF2, ORE14)


Aliases : HSS, ARF1-BP, ARF2, ORE14

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g33091
Cluster HCCA: Cluster_267

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00082980 ARF16,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Adi_g057783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g075709 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g110090 ARF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g49574 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07961 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g22072 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g12905 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g59651 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene24127.t1 ARF6, Aspi01Gene24127 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene51864.t1 ARF16, Aspi01Gene51864 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0065.g035933 ARF6 not classified & original description: CDS=1-678 0.02 OrthoFinder output from all 47 species
Azfi_s0065.g035934 No alias not classified & original description: CDS=1-342 0.01 OrthoFinder output from all 47 species
Cba_g09882 ARF1 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g33073 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g37448 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.10G078200.1 ARF6, Ceric.10G078200 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g08602 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015035001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.01 OrthoFinder output from all 47 species
LOC_Os02g06910.1 ARF6, LOC_Os02g06910 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os02g35140.1 ARF1, LOC_Os02g35140 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os11g32110.1 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
LOC_Os12g41950.1 ARF6, LOC_Os12g41950 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Lfl_g07818 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_69854g0010 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Msp_g15857 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13886 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10460 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19283 ARF4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g29226 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04439 ARF10 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11690 ARF6 transcriptional repressor *(IAA/AUX) & original description: none 0.02 OrthoFinder output from all 47 species
Smo437944 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
Solyc03g118290.3.1 HSS, ARF1-BP,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Solyc07g042260.4.1 ARF19, IAA22,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Spa_g12615 ARF16 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g29160 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012968_P001 ARF6, Zm00001e012968 transcription factor (ARF) 0.01 OrthoFinder output from all 47 species
Zm00001e013639_P001 ARF19, IAA22,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e016366_P002 ARF11, Zm00001e016366 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e018126_P002 ARF6, Zm00001e018126 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e020205_P004 ARF3, ETT, Zm00001e020205 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e025163_P001 ARF6, Zm00001e025163 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e030325_P003 ARF6, Zm00001e030325 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e041910_P003 ARF8, ATARF8,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 293 375
IPR003340 B3_DNA-bd 168 269
No external refs found!