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  5. Als_g33345

Als_g33345 (ARF6)


Aliases : ARF6

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g33345
Cluster HCCA: Cluster_269

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00215020 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT4G23980 ARF9 auxin response factor 9 0.02 OrthoFinder output from all 47 species
Adi_g014286 ARF4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057044 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g088063 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27966 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g11014 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11714.t1 ARF6, Aspi01Gene11714 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46203.t1 HSS, ARF1-BP,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene46204.t2 HSS, ARF1-BP,... ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08681 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01004942001 HSS, ARF1-BP, ARF2, ORE14 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
GSVIVT01025691001 ARF16 RNA biosynthesis.transcriptional activation.B3... 0.07 OrthoFinder output from all 47 species
GSVIVT01035204001 ARF8, ATARF8 RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
Gb_23328 HSS, ARF1-BP, ARF2, ORE14 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Gb_32404 ARF4 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Gb_39686 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os04g56850.1 MP, IAA24, ARF5,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os06g46410.1 ARF6, LOC_Os06g46410 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Len_g28161 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g18657 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Msp_g14175 ARF6 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g17376 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007919 ARF19, IAA22, ARF11 ARF-type transcription factor & original description: CDS=1-3501 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008995 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010740 TIR5, MSG1,... ARF-type transcription factor & original description: CDS=1-2400 0.03 OrthoFinder output from all 47 species
Sam_g30394 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40540 No alias ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Smo117217 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Solyc12g042070.3.1 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Spa_g05322 ARF8, ATARF8 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29254 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e014833_P002 ARF1, Zm00001e014833 transcription factor (ARF) 0.04 OrthoFinder output from all 47 species
Zm00001e025163_P001 ARF6, Zm00001e025163 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e030325_P003 ARF6, Zm00001e030325 transcription factor (ARF) 0.06 OrthoFinder output from all 47 species
Zm00001e032423_P002 ARF3, ETT, Zm00001e032423 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e041910_P003 ARF8, ATARF8,... transcription factor (ARF) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 257 340
IPR033389 AUX/IAA_dom 855 898
IPR003340 B3_DNA-bd 131 232
No external refs found!