1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g13808

Pnu_g13808


Description : heavy chain of clathrin triskelion & original description: none


Gene families : OG0002108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002108_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g13808

Target Alias Description ECC score Gene Family Method Actions
Cba_g27949 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Cre02.g101400 No alias Vesicle trafficking.clathrin coated vesicle (CCV)... 0.02 OrthoFinder output from all 47 species
Dde_g10505 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06146 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os12g01390.1 LOC_Os12g01390 heavy chain of clathrin triskelion 0.02 OrthoFinder output from all 47 species
Nbi_g03873 No alias heavy chain of clathrin triskelion & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004332 fructose-bisphosphate aldolase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
InterPro domains Description Start Stop
IPR022365 Clathrin_H-chain_propeller_rpt 155 197
IPR022365 Clathrin_H-chain_propeller_rpt 20 54
IPR015348 Clathrin_H-chain_linker_core 344 367
IPR000547 Clathrin_H-chain/VPS_repeat 850 975
IPR000547 Clathrin_H-chain/VPS_repeat 1145 1281
IPR000547 Clathrin_H-chain/VPS_repeat 557 692
IPR000547 Clathrin_H-chain/VPS_repeat 701 839
IPR000547 Clathrin_H-chain/VPS_repeat 1289 1431
IPR000547 Clathrin_H-chain/VPS_repeat 993 1133
IPR000547 Clathrin_H-chain/VPS_repeat 1437 1579
No external refs found!